CX295688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43 Identity = 92/202 (45.54%), Postives = 129/202 (63.86%), Query Frame = 3 Query: 132 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA------KGATSGDEKQVQI--------PKCCRAYNG 686 R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA K + KQ++ PK C Y G Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCG 210 HSP 2 Score: 72.0182 bits (175), Expect = 3.401e-12 Identity = 48/189 (25.40%), Postives = 85/189 (44.97%), Query Frame = 3 Query: 117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-------------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 614 D S V+VG++ P++T ++ F+ G + +++K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T + V+ G ++ +TD + FS F + RV + +G+ FV F E A AI +NG + ++C W Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 274
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.670e-41 Identity = 92/219 (42.01%), Postives = 128/219 (58.45%), Query Frame = 3 Query: 132 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA------KGATSGDEKQVQI--------PKCCRAYNG 686 R++YVGN+ VT L+ ++FS GP + CK+I + S Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA K + KQ++ PK C Y G Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCG 227 HSP 2 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 48/189 (25.40%), Postives = 85/189 (44.97%), Query Frame = 3 Query: 117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-------------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 614 D S V+VG++ P++T ++ F+ G + +++K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T + V+ G ++ +TD + FS F + RV + +G+ FV F E A AI +NG + ++C W Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 291
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40 Identity = 84/178 (47.19%), Postives = 117/178 (65.73%), Query Frame = 3 Query: 132 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623 +++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184 HSP 2 Score: 70.0922 bits (170), Expect = 1.292e-11 Identity = 45/182 (24.73%), Postives = 84/182 (46.15%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 614 V+VG++ P++T ++ F+ G + +++K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++ + + V+ G ++ +T+ + FS F + RV D +G+ FV F + E A AI +NG + ++C W Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40 Identity = 84/178 (47.19%), Postives = 117/178 (65.73%), Query Frame = 3 Query: 132 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623 +++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184 HSP 2 Score: 70.4774 bits (171), Expect = 9.894e-12 Identity = 44/182 (24.18%), Postives = 81/182 (44.51%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------------YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 614 V+VG++ P++T ++ F+ G + +++K YGFV +F++ A AI + G+ + G+ I+ NWA Y + + + V+ G ++ +T+ + FS F + RV D +G+ FV F + E A AI +NG + ++C W Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33 Identity = 72/167 (43.11%), Postives = 106/167 (63.47%), Query Frame = 3 Query: 132 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623 R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A+ TLNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+ VMWD +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWAAK Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22 Identity = 60/192 (31.25%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQIPKCCRAYNGISE 695 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ + A N +S+ Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ 203
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22 Identity = 60/192 (31.25%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQIPKCCRAYNGISE 695 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ + A N +S+ Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ 203
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22 Identity = 60/192 (31.25%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQIPKCCRAYNGISE 695 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ + A N +S+ Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ 203
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQIPKCCRAYN 683 ++YVG + +V+ ++L E+ GP+ + K + +GFV++ A AI LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F ++M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G+ + A N Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQN 199
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19 Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 S+YVG++HP+VT A+L E FS GP+ ++ I + Y +V+Y A A+ TLN I G+P+++ W SQR+ + SG NVF+ +L + + L+ FS F +V D+K +G+GFV F+ QE A+ AI+ +NG +L R+I Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159 The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bpback to top |