CX295700

Overview
NameCX295700
Unique NameCX295700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:138..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.404e-28
Identity = 67/137 (48.91%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  260 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSK----HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            VS+ELD KTG +K+T++ YA  +  D    + YE++F+VPSGFG IGAI+V NE  +EM+L+DI L   DG  N  V  + CNSW+  K         KR+FF NK YLP QTP GL+ YR  +L   RG+G GER+
Sbjct:  119 VSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGERE 255          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 2
Query:  260 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKPMIDL*YD 670
            +S ++DPKT   K +    ++D+++K  +  +  + Y +EF V S FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+ FTN+ YLPS+TP GL+  R +EL  LRGNG+GERK + D  YD
Sbjct:  130 MSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAE-RVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKELENLRGNGKGERK-LSDRIYD 268          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.189e-27
Identity = 62/131 (47.33%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  260 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL--DGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            VS+ELDPKTG ++  ++ +A     +G     YE++  VP+ FG +GA+LVENEHH+EM++KDI L   G  +  +     SW+HSK D+ + R FFT K YLPSQTP G++  R +EL  LRG+G  ERK
Sbjct:  106 VSSELDPKTGRERERVKGFAHMTLKEGT----YEAKMSVPASFGPVGAVLVENEHHREMFIKDIKLITGGDESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGIEALRKKELETLRGDGHSERK 232          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 62/141 (43.97%), Postives = 91/141 (64.54%), Query Frame = 2
Query:  260 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKPMIDL*YD 670
            +S +LDPKT L K +    ++D+++K     +  + Y +EF V + FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+FFTN+ YLP++TP GL+  R +EL  LRG+G G RK + D  YD
Sbjct:  124 ISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAE-RVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKELKNLRGDGSGVRK-LSDRIYD 262          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 65/137 (47.45%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  260 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSKHDNKQ----KRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            VS+EL+ KTG  K+T+  YA K+  D  G + YE++F+VP+GFG IGA++V NE  +EM+L+D+ L   DG  N  V  + CNSW+  K    +    KR+FF  K YLP QTP GL+ YR E+L   RGNG G+R+
Sbjct:  137 VSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGLRSYREEDLKQKRGNGAGQRE 272          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 66/143 (46.15%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  260 VSAELDPKTGLD----KSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDG--LPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKPMIDL*YD 670
            +S ++ P+T       + +I+D+ +K GA GD ++ Y +EF V + FGE GAI V N H++E +L+ IV++G  LP GPV+  CNSW+ S  +   KRVFF+NK YLPS+TP GL+  R +EL  LRG+G G RK + D  YD
Sbjct:  118 ISTKIHPRTKKPMQSGRVSIKDWCQKRGAKGD-HVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKELKDLRGDGTGVRK-LSDRIYD 258          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.113e-25
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  260 VSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKPMIDL*YD 670
            VS E DP+ G  K    S +  +  K     +  + Y +EF V +GFGE GA+ V N H +E Y++ IV++G P GP + TCNSW+     ++ +RVFF+N+ YLPS+TP GL+  R  EL  LRG+G GER+ + D  YD
Sbjct:  106 VSTETDPRKGTPKKSKPSALVGWFDKKDVKAE-RVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGLRELRLRELADLRGDGTGERR-ITDRVYD 244          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 54/127 (42.52%), Postives = 85/127 (66.93%), Query Frame = 2
Query:  260 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGE 640
            +SA+ D +      T++DYA+++ A+     +YE EFE+P  FG +GAI ++N++H++++LK + L  LP G +  TC SW+  K  +  KR+FF++K YLPSQTP+ LK+YR EEL  L+G  + E
Sbjct:  111 ISAKTDQRI-----TVEDYAQRVWAEAPDE-KYECEFEMPEDFGPVGAIKIQNQYHRQLFLKGVELK-LPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQGKNREE 230          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 61/131 (46.56%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  260 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL--DGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            VS+ELDP+TG ++  I    +  G   D    YE+ F+VP+ FG IGA+ V N HH EM L DI +   G     V   C SW+   H    KRVFF    YLPSQTP G++  R  EL ILRG G GERK
Sbjct:  120 VSSELDPQTGQEREPISGAVKHSGRVDDEWDMYEATFKVPASFGPIGAVQVTNYHHSEMLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRELEILRGTGCGERK 250          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  338 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            G G   Y+  FE  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++  + K  R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK
Sbjct:   89 GAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERK 192          
The following BLAST results are available for this feature:
BLAST of CX295700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
LOXC1_ORYSJ1.404e-2848.91Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX4_ARATH9.104e-2844.68Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU1.189e-2747.33Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH1.007e-2643.97Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ1.717e-2647.45Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX6_ORYSJ2.929e-2646.15Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX5_ORYSJ1.113e-2543.26Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX2_ARATH2.099e-2442.52Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU4.675e-2446.56Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX4_SOYBN3.136e-2045.19Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075A02SK DroRLeaf1 Citrus clementina cDNA clone C05075A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295700 ID=CX295700; Name=CX295700; organism=Citrus clementina; type=EST; length=671bp
TCTCCATGGAAATTACGGCCATGCCTTTCTTCCAGTTCCATCTACCTCTT
CACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTCCCAGAAAC
ACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAAGTTAAGGC
TGTTGTTACTGTGAAACCAACTGTGGGAAGCTTCCTCTCAAATATTTCTT
TAGACCGAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAATCACTTCTC
TTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTGGATAAATC
CACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGATGGAAACA
TGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAGAAATTGGC
GCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTGAAAGATAT
TGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATGTAATTCAT
GGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCTTTACCAAC
AAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGATATAGAGC
TGAGGAGCTTACCATTTTGCGAGGTAATGGACAAGGAGAGCGCAAACCTA
TGATAGATCTATGATATGATG
back to top