CX295707

Overview
NameCX295707
Unique NameCX295707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12838 contig Ccv1_Contig12838:19..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_MOOTA (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Moorella thermoacetica (strain ATCC 39073) GN=gatB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.866e-49
Identity = 90/147 (61.22%), Postives = 112/147 (76.19%), Query Frame = 3
Query:  288 EYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHRRFGITRVHMEEDAGKLLHAD--DGEYSQVD 722
            EYEA+IG+E H +L T SKAFC C   +G +PNT VCP+C+GLPG LPV+N +VVEF +K  LALNC+++ + KFDRK Y+YPDLPK YQISQ+D+P+ATGGYL +++     G  R  GITRVHMEEDAGKL+H D   G YS VD
Sbjct:    2 EYEAVIGLEVHAELKTASKAFCSCSTAFGGEPNTHVCPVCLGLPGVLPVINRQVVEFGLKTALALNCRVAPFCKFDRKNYYYPDLPKNYQISQYDLPLATGGYLKINV----DGQERVIGITRVHMEEDAGKLVHVDGPGGGYSLVD 144          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_PELCD (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 3
Query:  279 ISKEYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHRRFGITRVHMEEDAGKLLHADDGEYSQVDL 725
            ++  YE +IG+E HVQL+T +K FC C   +G+QPN+  CP+C+GLPGALPV+N KVVE+A+K GLA NC ++  S F RK YFYPDLPKGYQISQF++PI   G LD+D+     G  +  GITR+HMEEDAGKLLH DDG+ S+VDL
Sbjct:    1 MTSRYEVVIGLEVHVQLTTQTKIFCNCSIAFGNQPNSQTCPVCLGLPGALPVLNRKVVEYAIKTGLATNCSIAPRSIFARKNYFYPDLPKGYQISQFELPICEHGRLDIDV----DGTSKSIGITRIHMEEDAGKLLH-DDGDTSRVDL 144          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_NOSP7 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 93/158 (58.86%), Postives = 116/158 (73.42%), Query Frame = 3
Query:  267 TLDRISKEYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDL-PVEFGGGHRRFGITRVHMEEDAGKLLHA-----DDGEYSQVD 722
            T   +  EYEAIIG+ETH QLST +K F      +G+ PNT++ P+CMGLPG LPV+N KV+E+AVK GLALNC+++ YSKFDRKQYFYPDLPK YQISQ+D+PIA  G+L+++L   E     +R GITR+HMEEDAGKL+HA         YS VD
Sbjct:    3 TATTVKTEYEAIIGLETHCQLSTKTKIFSNSSTAFGADPNTNIDPVCMGLPGVLPVLNEKVLEYAVKTGLALNCQIARYSKFDRKQYFYPDLPKNYQISQYDLPIAEHGWLEIELVDAEGNPSRKRIGITRLHMEEDAGKLVHAGSDRLSGSSYSLVD 160          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_ANAVT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 89/146 (60.96%), Postives = 112/146 (76.71%), Query Frame = 3
Query:  279 ISKEYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVD-LPVEFGGGHRRFGITRVHMEEDAGKLLHADDGEYS 713
            +  EYEAIIG+ETH QLST +K F      +G+ PNT++ P+CMGLPG LPV+N KV+E+AVK GLALNC+++ YSKFDRKQYFYPDLPK YQISQ+D+PIA  G+L+++ L  E     +R GITR+HMEEDAGKL+HA     S
Sbjct:    7 VKTEYEAIIGLETHCQLSTNTKIFSSSSTAFGADPNTNIDPVCMGLPGVLPVLNEKVLEYAVKAGLALNCQIAKYSKFDRKQYFYPDLPKNYQISQYDLPIAEHGWLEIELLDAEGNPKRKRIGITRLHMEEDAGKLVHAGSDRIS 152          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_ANASP (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Anabaena sp. (strain PCC 7120) GN=gatB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 3
Query:  279 ISKEYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHR-RFGITRVHMEEDAGKLLHADDGEYS 713
            +  EYEAIIG+ETH QLST +K F      +G+ PNT++ P+CMGLPG LPV+N KV+E+AVK GLALNC+++ YSKFDRKQYFYPDLPK YQISQ+D+PIA  G+L+++L    G   R R GITR+HMEEDAGKL+HA     S
Sbjct:    7 VKTEYEAIIGLETHCQLSTNTKIFSSSSTAFGADPNTNIDPVCMGLPGVLPVLNEKVLEYAVKAGLALNCQIAKYSKFDRKQYFYPDLPKNYQISQYDLPIAEHGWLEIELLDADGNPKRKRIGITRLHMEEDAGKLVHAGSDRIS 152          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_ACAM1 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Acaryochloris marina (strain MBIC 11017) GN=gatB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 87/136 (63.97%), Postives = 108/136 (79.41%), Query Frame = 3
Query:  288 EYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHR-RFGITRVHMEEDAGKLLH 692
            EYEA+IG+ETH QLST +K FC C   +G+ PN  VC ICMG+PG LPV+N  V+E+AVK G ALNC+++ YSKFDRKQYFYPDLPK YQ+SQFD+PIA  G+L+V++  E G   R + GITR+HMEEDAGKL+H
Sbjct:   10 EYEAVIGLETHCQLSTKTKIFCNCSTAFGADPNHQVCSICMGMPGVLPVLNETVLEYAVKAGRALNCEIAKYSKFDRKQYFYPDLPKNYQVSQFDLPIAEHGWLEVEIVDEQGEATRKKIGITRLHMEEDAGKLVH 145          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_TRIEI (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Trichodesmium erythraeum (strain IMS101) GN=gatB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.731e-46
Identity = 90/154 (58.44%), Postives = 115/154 (74.68%), Query Frame = 3
Query:  279 ISKEYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHR-RFGITRVHMEEDAGKLLHA-----DDGEYSQVD 722
            +  +YEAIIG+ETH QLST +K F      +G+ PNT++ PICMG+PG LPV+N KV+E+AVK GLALNC+++ YSKFDRKQYFYPDLPK YQISQ+D+PIA  G+L++++  E G   R + GITR+HMEEDAGKL+H          YS VD
Sbjct:    7 VKTKYEAIIGLETHCQLSTQTKIFSNSSTEFGATPNTNIDPICMGMPGVLPVLNEKVLEYAVKAGLALNCEIALYSKFDRKQYFYPDLPKNYQISQYDLPIAEHGWLEIEIVEEDGNATRKKIGITRLHMEEDAGKLVHGGSDRLSGSTYSMVD 160          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_THEEB (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermosynechococcus elongatus (strain BP-1) GN=gatB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.260e-46
Identity = 92/158 (58.23%), Postives = 117/158 (74.05%), Query Frame = 3
Query:  270 LDRISKEYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHR-RFGITRVHMEEDAGKLLHA-----DDGEYSQVDL 725
            +D  S  YEA+IG+E H QLST +K F      +G+ PNT++ P+C+GLPG LPV+N KV+E+AVK GLALNC+++ YSKFDRKQYFYPDLPK YQISQ+D+PIA  GYL+++L  + G   R + GITR+HMEEDAGKL+HA         YS VDL
Sbjct:    8 VDAASLTYEAVIGLEIHCQLSTQTKIFSSSSTQFGAPPNTNIDPVCLGLPGTLPVLNEKVLEYAVKAGLALNCQIAPYSKFDRKQYFYPDLPKNYQISQYDLPIAHHGYLEIELVDDKGTARRKKIGITRLHMEEDAGKLVHAGSDRLSGSAYSLVDL 165          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_THETN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermoanaerobacter tengcongensis GN=gatB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 82/135 (60.74%), Postives = 106/135 (78.52%), Query Frame = 3
Query:  288 EYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHRRFGITRVHMEEDAGKLLH 692
            +YEA+IG+E H +L T SK FC C   +GS+PNT VCP+C+GLPG LPV+N KVVE+AV+ GLALNC ++ +SK DRK YFYPDLPK YQISQ+D+P+ + GY++    +E  GG +R GI R+H+EEDAGKLLH
Sbjct:    2 KYEAVIGLEVHAELLTDSKIFCGCSTKFGSEPNTQVCPVCLGLPGTLPVLNKKVVEYAVRAGLALNCTIANFSKMDRKNYFYPDLPKAYQISQYDLPLCSNGYIE----IEVEGGTKRIGIKRIHIEEDAGKLLH 132          
BLAST of CX295707 vs. ExPASy Swiss-Prot
Match: GATB_SYNJB (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Synechococcus sp. GN=gatB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 91/150 (60.67%), Postives = 111/150 (74.00%), Query Frame = 3
Query:  288 EYEAIIGIETHVQLSTLSKAFCPCPYIYGSQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFYSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEFGGGHRRFGITRVHMEEDAGKLLHA-----DDGEYSQVD 722
            +YEA+IG+E H QLST SK F      +G+ PNT + PICMGLPG LPV+N KV+E+AVK GLALNC ++ YSKFDRKQYFYPDLPK YQISQ+D+PIAT G++++ L     G  +R GITR+HMEEDAGKL+HA         YS VD
Sbjct:   10 QYEAVIGLEVHCQLSTRSKIFSSSATAFGAPPNTQIDPICMGLPGTLPVLNEKVLEYAVKAGLALNCTIAPYSKFDRKQYFYPDLPKNYQISQYDLPIATHGWIEIQLS---DGRTKRIGITRLHMEEDAGKLVHAGSDRLSGSSYSLVD 156          
The following BLAST results are available for this feature:
BLAST of CX295707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATB_MOOTA4.866e-4961.22Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_PELCD1.565e-4759.73Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_NOSP71.565e-4758.86Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_ANAVT5.949e-4760.96Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_ANASP7.769e-4761.64Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_ACAM17.769e-4763.97Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_TRIEI1.731e-4658.44Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_THEEB2.260e-4658.23Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_THETN3.856e-4660.74Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
GATB_SYNJB3.856e-4660.67Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]

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Properties
Property NameValue
Genbank descriptionC05075A09SK DroRLeaf1 Citrus clementina cDNA clone C05075A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295707 ID=CX295707; Name=CX295707; organism=Citrus clementina; type=EST; length=730bp
GAGGGTCGCTTCGCTGCTCAAGCAGAGCAGCCTTCCATTGTCTGATTTTT
TATTTGGAGTGAATTATCGATAACATGGCTTCCTTCTTGTTTAGAACCAT
ACAAAGCCACTCTTTCTTGCTATGCCCGACTACATTACTTAGAAGAAACA
ATGGCGCTTTTTATTGTTCAATGAAAAGCACACATACCCAAACAGCCACG
CAAGAAAAACAACAACCATCCCCAAAAATCAAAAGTTCCCCACAAAGTAA
CCAGGCCAAAACCAGAACACTTGATAGAATCAGTAAAGAATATGAAGCGA
TTATTGGTATAGAAACCCATGTCCAGCTCTCCACACTCTCCAAGGCCTTT
TGTCCTTGCCCTTACATTTATGGCTCGCAACCAAACACTAGTGTCTGCCC
CATTTGCATGGGTTTGCCCGGCGCCTTGCCGGTAGTCAACTCGAAAGTGG
TTGAGTTTGCAGTGAAATTAGGCCTTGCTTTGAATTGCAAGTTGTCTTTC
TACTCAAAGTTTGATAGGAAGCAGTACTTTTATCCAGATCTTCCAAAGGG
TTACCAAATATCTCAGTTTGATATCCCAATTGCCACCGGTGGTTACTTAG
ATGTGGATCTTCCCGTTGAGTTTGGTGGTGGACATAGGAGGTTTGGCATT
ACTAGAGTTCATATGGAAGAAGATGCAGGGAAGCTTCTTCATGCTGACGA
TGGAGAATACTCACAGGTTGATTTAATAGA
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