CX295752

Overview
NameCX295752
Unique NameCX295752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12954 contig Ccv1_Contig12954:740..1478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 1.355e-95
Identity = 173/227 (76.21%), Postives = 202/227 (88.99%), Query Frame = 2
Query:    8 QDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            +DVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F   + F+PSAFGSL+T+RR  VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY+LPE+LE  +LICE+ +KP+YLVALL+S   EKCI+FTSSVE+
Sbjct:  111 KDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVET 337          

HSP 2 Score: 23.483 bits (49), Expect = 1.355e-95
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  688 THRLCTLLNHFGE 726
            T RLC LLN FG+
Sbjct:  338 TRRLCKLLNFFGD 350          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.954e-75
Identity = 147/228 (64.47%), Postives = 180/228 (78.95%), Query Frame = 2
Query:    8 QDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            ++VF AIAP VGLSVG AVGQSSIADE+S LI++ K       D E +  E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N  +SD +    +    L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L  EKC+VFTSSVES
Sbjct:  127 KEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVES 352          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.869e-25
Identity = 72/196 (36.73%), Postives = 114/196 (58.16%), Query Frame = 2
Query:  164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP---------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESKLKPLYLVALL-QSL--------GEEKCIVFTSSVE 685
            +S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL  V+  T   ++ N+  +      ++ G ++   +       KD             +LVK++LSAT+T +P+K++ L L+ PLF TT +T   +Y +P  L+   +I     KPL L+ ++ +SL         ++K I FT SV+
Sbjct:  145 ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEK---SISLKDNNNQMNHLCWSEFKLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVD 337          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 76/239 (31.80%), Postives = 111/239 (46.44%), Query Frame = 2
Query:   14 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            VF     A  L V L  GQ S+A E   L+++                  +   DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++   +Q+WLP V+          F       P A   L+  +   V       P   L K++ SATLTQ+P KL QL LH P   +TG                +Y  P  L  + + C    KPL ++ L+  +G  + + FT+S E+
Sbjct:  300 VFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSREN 516          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 76/235 (32.34%), Postives = 111/235 (47.23%), Query Frame = 2
Query:   11 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 685
            +VF+A      L V +  GQ S A E + L    ++  G+ +          S  DI+VATPGRL+DHIN    F+L+HL +L++DE DR++   +Q+WL  V +   S      +  S F  +  G         +       P   L K++ SATLTQ+P KL  LDLH P LF +T          +  +  P+ L  Y + C    KPL ++  L  L     + FT+S E
Sbjct:  290 NVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--THTSVFRRTVPGP--------ITAASLSPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSRE 501          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 71/243 (29.22%), Postives = 110/243 (45.27%), Query Frame = 2
Query:   14 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            VF        L V L  GQ S+A E   L+++                  +   DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++   +Q+WLP V+             A+ +     GS   ++R     +       P   L K++ SATLTQDP KL +L L+ P   +T                  +Y  P  L  + + C    KPL ++ L+  +   + + FT+S E+
Sbjct:  272 VFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA------------AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSREN 489          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 85/240 (35.42%), Postives = 118/240 (49.17%), Query Frame = 2
Query:   29 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG----------------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVES 688
            A   GL V  AVG  +I DE  E +                +   +  VDIL+ TPGRL+DH+  T+GFTL++L +LV+DE DRLL E++Q W+  V  +T  D            P AFG S   +   G+    K+   PR  K+VLSAT+T+D  KL  L L +P  +  G                + ++ LP  LE + + + +   KPLYL+ LL S    E K +VFT S ES
Sbjct:  219 AAGSGLRVASAVGNVAIKDEQRESLP-------------GYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVV--MTSLDARK--------APDAFGFSGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATEDESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSES 430          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_CANGA (ATP-dependent RNA helicase DBP6 OS=Candida glabrata GN=DBP6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 71/210 (33.81%), Postives = 106/210 (50.48%), Query Frame = 2
Query:   71 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            S +A+  S +I   KLE       E+  + L++  DI + TPGRL+DH+  +   +L +L +LV+DE DRLL +++Q W+P V+   +SD  ++   +                              ++KMV SATLT +  KL  L L++P LF T     Y LP  L+ Y+L     +S  KPLYL+ LL+ L   K +VF  S ES
Sbjct:  299 SQLAEGTSLVITVSKLENSF---NEEHKRLLKTEPDIFITTPGRLVDHLTNS-SISLRNLKFLVLDEADRLLNQSFQNWIPEVMSKFKSDKFDQMPGS------------------------------IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSGGKTLVFVRSNES 474          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 2
Query:  158 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            E +  +D+LV+TPGRL+DHI     F+L+HL Y+V+DE DRLL +++Q W+ TV+          N++   D     + TFLP    +L   R           P P L K+V SATLT+DP+K+A L LH+P  +            GE       + +P  L+ Y +   S+ KP+ L  L+ S      + F  S E+
Sbjct:  256 ENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYR----------LPSP-LQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEA 443          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 69/228 (30.26%), Postives = 103/228 (45.18%), Query Frame = 2
Query:   86 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESLT 694
            E+  L K+ KLE       E    +  S  DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++   +Q WL  +    +   +     A T  P  +  L        +  F  +P+    K++ SATL+QDP KL  L L  P    T  T                         RY  P  L     + E +LKPL + AL++    ++ + FT+S +  T
Sbjct:  245 EVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLL--AGTQAPLCYAEL--------QASFGKQPH----KLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQAT 458          
The following BLAST results are available for this feature:
BLAST of CX295752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RH1_ARATH1.355e-9576.21DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
RH1_ORYSJ6.954e-7564.47DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
DDX51_DICDI3.869e-2536.73Probable ATP-dependent RNA helicase ddx51 OS=Dicty... [more]
DDX51_HUMAN3.621e-2331.80ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DDX51_DANRE8.920e-2232.34ATP-dependent RNA helicase DDX51 OS=Danio rerio GN... [more]
DDX51_MOUSE9.862e-2129.22ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
DBP6_ASPNC9.862e-2135.42ATP-dependent RNA helicase dbp6 OS=Aspergillus nig... [more]
DBP6_CANGA3.748e-2033.81ATP-dependent RNA helicase DBP6 OS=Candida glabrat... [more]
DBP6_SCHPO2.686e-1833.83ATP-dependent RNA helicase dbp6 OS=Schizosaccharom... [more]
DDX51_DROME1.021e-1730.26Probable ATP-dependent RNA helicase Dbp73D OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionC05075E07SK DroRLeaf1 Citrus clementina cDNA clone C05075E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295752 ID=CX295752; Name=CX295752; organism=Citrus clementina; type=EST; length=739bp
AGGAGGTCAGGATGTTTTCGCTGCGATTGCACCTGCAGTGGGTTTGTCTG
TTGGTTTGGCTGTGGGTCAATCTTCTATTGCTGATGAAATTTCGGAGCTT
ATTAAGAGACCTAAGCTCGAGGCAGGAATCTGTTATGACCCTGAAGATGT
TTTGCAAGAGTTACAGAGTGCAGTAGATATATTGGTGGCAACTCCAGGAA
GGCTAATGGACCATATCAATGCTACTAGGGGATTTACCCTCGAGCATCTC
TGTTACCTTGTTGTTGACGAAACTGATCGATTGCTTAGGGAGGCATATCA
GGCTTGGCTGCCCACTGTGCTCCAATTAACTCGATCTGATAATGAAAACC
GCTTTTCTGATGCAAGTACTTTTCTGCCTTCAGCATTTGGCTCTTTAAAA
ACCATAAGAAGATGTGGTGTTGAAAGGGGCTTTAAGGACAAACCTTATCC
TAGGCTTGTGAAGATGGTTTTATCTGCCACGTTAACCCAAGATCCAAATA
AGCTCGCTCAGCTTGATCTGCATCACCCTTTATTCCTGACCACTGGGGAA
ACTCGTTATAAGCTCCCAGAAAGATTGGAGTCCTACAAACTGATTTGTGA
GTCGAAGCTGAAGCCCTTGTATTTGGTTGCACTTCTTCAAAGTTTAGGAG
AGGAGAAATGTATTGTCTTCACATCATCTGTGGAGTCACTCACCGTCTCT
GTACACTACTGAACCATTTTGGTGAATGAGAATAAGATA
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