CX295752
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2) HSP 1 Score: 348.206 bits (892), Expect = 1.355e-95 Identity = 173/227 (76.21%), Postives = 202/227 (88.99%), Query Frame = 2 Query: 8 QDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688 +DVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+ Sbjct: 111 KDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVET 337 HSP 2 Score: 23.483 bits (49), Expect = 1.355e-95 Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1 Query: 688 THRLCTLLNHFGE 726 T RLC LLN FG+ Sbjct: 338 TRRLCKLLNFFGD 350
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 6.954e-75 Identity = 147/228 (64.47%), Postives = 180/228 (78.95%), Query Frame = 2 Query: 8 QDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688 ++VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N +SD + + L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES Sbjct: 127 KEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVES 352
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.869e-25 Identity = 72/196 (36.73%), Postives = 114/196 (58.16%), Query Frame = 2 Query: 164 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP---------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESKLKPLYLVALL-QSL--------GEEKCIVFTSSVE 685 +S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+ T ++ N+ + ++ G ++ + KD +LVK++LSAT+T +P+K++ L L+ PLF TT +T +Y +P L+ +I KPL L+ ++ +SL ++K I FT SV+ Sbjct: 145 ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEK---SISLKDNNNQMNHLCWSEFKLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVD 337
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23 Identity = 76/239 (31.80%), Postives = 111/239 (46.44%), Query Frame = 2 Query: 14 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688 VF A L V L GQ S+A E L+++ + DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ F P A L+ + V P L K++ SATLTQ+P KL QL LH P +TG +Y P L + + C KPL ++ L+ +G + + FT+S E+ Sbjct: 300 VFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSREN 516
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22 Identity = 76/235 (32.34%), Postives = 111/235 (47.23%), Query Frame = 2 Query: 11 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 685 +VF+A L V + GQ S A E + L ++ G+ + S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V + S + S F + G + P L K++ SATLTQ+P KL LDLH P LF +T + + P+ L Y + C KPL ++ L L + FT+S E Sbjct: 290 NVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--THTSVFRRTVPGP--------ITAASLSPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSRE 501
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 71/243 (29.22%), Postives = 110/243 (45.27%), Query Frame = 2 Query: 14 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688 VF L V L GQ S+A E L+++ + DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ A+ + GS ++R + P L K++ SATLTQDP KL +L L+ P +T +Y P L + + C KPL ++ L+ + + + FT+S E+ Sbjct: 272 VFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA------------AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSREN 489
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 85/240 (35.42%), Postives = 118/240 (49.17%), Query Frame = 2 Query: 29 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG----------------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVES 688 A GL V AVG +I DE E + + + VDIL+ TPGRL+DH+ T+GFTL++L +LV+DE DRLL E++Q W+ V +T D P AFG S + G+ K+ PR K+VLSAT+T+D KL L L +P + G + ++ LP LE + + + + KPLYL+ LL S E K +VFT S ES Sbjct: 219 AAGSGLRVASAVGNVAIKDEQRESLP-------------GYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVV--MTSLDARK--------APDAFGFSGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATEDESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSES 430
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_CANGA (ATP-dependent RNA helicase DBP6 OS=Candida glabrata GN=DBP6 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20 Identity = 71/210 (33.81%), Postives = 106/210 (50.48%), Query Frame = 2 Query: 71 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688 S +A+ S +I KLE E+ + L++ DI + TPGRL+DH+ + +L +L +LV+DE DRLL +++Q W+P V+ +SD ++ + ++KMV SATLT + KL L L++P LF T Y LP L+ Y+L +S KPLYL+ LL+ L K +VF S ES Sbjct: 299 SQLAEGTSLVITVSKLENSF---NEEHKRLLKTEPDIFITTPGRLVDHLTNS-SISLRNLKFLVLDEADRLLNQSFQNWIPEVMSKFKSDKFDQMPGS------------------------------IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSGGKTLVFVRSNES 474
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18 Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 2 Query: 158 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688 E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ N++ D + TFLP +L R P P L K+V SATLT+DP+K+A L LH+P + GE + +P L+ Y + S+ KP+ L L+ S + F S E+ Sbjct: 256 ENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYR----------LPSP-LQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEA 443
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3) HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17 Identity = 69/228 (30.26%), Postives = 103/228 (45.18%), Query Frame = 2 Query: 86 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESLT 694 E+ L K+ KLE E + S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + + + A T P + L + F +P+ K++ SATL+QDP KL L L P T T RY P L + E +LKPL + AL++ ++ + FT+S + T Sbjct: 245 EVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLL--AGTQAPLCYAEL--------QASFGKQPH----KLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQAT 458 The following BLAST results are available for this feature:
BLAST of CX295752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295752 ID=CX295752; Name=CX295752; organism=Citrus clementina; type=EST; length=739bpback to top |