CX295773

Overview
NameCX295773
Unique NameCX295773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295773 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.440e-37
Identity = 90/223 (40.36%), Postives = 135/223 (60.54%), Query Frame = 3 
Query:   18 CVSTSSQDQTFIKNKLVNIVDHVLLLHSGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG 686
            CVS S+ D+  ++  LV  +  VLLLH GPI KF+LS        DID+W+L++SR+ +KE +L++ +G+ ++VP+ LF C  L  LEL +C   PP  FKGF  LKSL+L  I ++ +V E+LIS  P LE L+L  FD    L+I APNL +  + G F D+  ENT  L  +S+ +Y++ ++       +   L++F   +P + +L    YF KYL+IG
Sbjct:   54 CVSPSN-DRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMH-EDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIG 272
The following BLAST results are available for this feature:
BLAST of CX295773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FDL1_ARATH4.440e-3740.36F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC05075G04SK DroRLeaf1 Citrus clementina cDNA clone C05075G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295773 ID=CX295773; Name=CX295773; organism=Citrus clementina; type=EST; length=744bp
CTTGTGTTTGATATCATTGTGTCTCTACTTCTTCCCAAGATCAGACCTTC
ATCAAGAATAAGCTTGTCAACATCGTTGATCATGTTCTCTTGCTTCATAG
TGGGCCAATACTCAAGTTTAAACTCTCTCACCGAGATCTTCTAGGTGTCA
GTGATATTGATAGATGGATTCTTTATATGTCAAGAAGCTGTGTCAAAGAA
TTCATACTTGAGATCTGGAAGGGACAGCGCTATAAGGTTCCTTCTAGTTT
ATTCTTGTGCCAAAATTTGATTCATCTGGAGCTATTTAATTGTTTGTTGA
AGCCGCCATCAACATTCAAAGGCTTCAGGAATTTGAAAAGTCTCGATCTA
CAACACATTACCCTGTCCCAGGATGTGTTTGAAAATTTAATTTCAAGCAG
CCCTACGCTTGAGAGGTTGACATTGATGAATTTTGATGGTTTCACCCATC
TTAATATTGATGCACCTAATCTCCAATTTTTTGATATTGGAGGAGTTTTT
GATGATGTTACCTTCGAGAACACCTTCCATTTAGCTTTGGTTTCCATTGG
CTTGTACGTAAATGTCAAAAATGATCAGGCCATGGGTCCTGGAAATTCTT
GTAAATTGCTAAGATTCTTTGTTCATCTTCCTCACATTCGAAGGCTTGAG
ATTCAGAGTTATTTTCTAAAGTATTTGGCTATTGGCACGTGCCAGCAGGT
TGCTCGTCATGTGTGATCTGAATATCTTCTATCGCATAATTTCA
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