CX295809

Overview
NameCX295809
Unique NameCX295809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6565 contig Ccv1_Contig6565:953..1717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295809 vs. ExPASy Swiss-Prot
Match: ROGF1_ARATH (Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.388e-81
Identity = 152/228 (66.67%), Postives = 170/228 (74.56%), Query Frame = 3
Query:    3 KLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGKVKGLVADSEKNHSLAHRAKTLLHSLRLRFPGLPQTALDMNKIQYNR 686
            KLDAMLI MLD F +TEFWY                S        SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLAEMEIP  YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAAVHVW+QK+              WGGKVKGLV D+E+N  L  RA+TLL SLR+RFPGLPQT LDMNKIQYN+
Sbjct:  199 KLDAMLIDMLDAFSDTEFWYTDRGIVLGDCDKDSYNSPA------SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNK 420          
BLAST of CX295809 vs. ExPASy Swiss-Prot
Match: ROGF2_ARATH (Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.093e-45
Identity = 109/234 (46.58%), Postives = 147/234 (62.82%), Query Frame = 3
Query:    3 KLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSV--RHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGKVKGLVA---DSEKNHSLAHRAKTLLHSLRLRFPGLPQTALDMNKIQYNR 686
            KLD+ML+  LD F +TEFWY              +  S   S R  +  R EEKWWLP P VP  GLSE  RK+L+  R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA  GD IYR++T+  +FSPE LLD L + SEH  L++A+R+EA+++ W++K               W   VK L++    S+KN+ LA RA++LL  L+ R+P L QT+LD+ KI  N+
Sbjct:  225 KLDSMLMEALDSFQKTEFWYAEEGSLSMK-----STRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK------ACLNNSKSSW-NMVKDLMSITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNK 446          
The following BLAST results are available for this feature:
BLAST of CX295809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ROGF1_ARATH1.388e-8166.67Rop guanine nucleotide exchange factor 1 OS=Arabid... [more]
ROGF2_ARATH2.093e-4546.58Rop guanine nucleotide exchange factor 2 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05076B04SK DroRLeaf1 Citrus clementina cDNA clone C05076B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295809 ID=CX295809; Name=CX295809; organism=Citrus clementina; type=EST; length=765bp
AGAAGCTTGATGCTATGTTGATTGGTATGCTTGATGGATTTTGTGAGACG
GAGTTTTGGTATGTTGATAGAGGGATTGTTGTGGGTGATGGAGGTGACCG
TGATGCATTTTCATCAATGGTTCCAAGTGGAAGACCATCTGTTAGGCATG
AAGAGAAGTGGTGGTTGCCATGTCCGAAAGTGCCCCAAAATGGGTTGTCT
GAGGACGTAAGGAAAAAATTGCAGCAATGTAGGGATTGCACAAATCAGAT
ACTTAAGGCGGCCATGGCAATTAATAGTAGTGTGCTTGCAGAGATGGAGA
TACCAGCTGCATACTTGGAAACCTTGCCCAAGAATGGAAAAGCTTGTCTT
GGTGATATCATCTATCGCTACATAACTGCTGATCAGTTCTCGCCTGAGTG
TCTTCTTGATTGCCTCGACTTGTCATCAGAGCATCACACTTTGGAAGTAG
CTAACAGAATTGAGGCAGCAGTGCATGTATGGAAGCAGAAAGATCAGAGA
AAACATTTAAGTCACTCGAAATCTAGGCGCTCGTCATGGGGTGGCAAAGT
CAAGGGCCTTGTTGCTGACTCTGAAAAGAATCATTCTCTGGCCCATCGAG
CCAAGACTCTATTGCACAGCCTAAGGCTTCGATTTCCTGGCCTCCCACAG
ACTGCATTGGATATGAACAAGATTCAGTACAACAGGTATTAGCCCGGTCC
TTTTGCATATTACATATACTGACTCTTACTATTTATACATGTATACTGTC
AAACACATCTATTAT
back to top