CX295812

Overview
NameCX295812
Unique NameCX295812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295812_ssr75 microsatellite CX295812_ssr75:75..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_DICDI (Protein midA, mitochondrial OS=Dictyostelium discoideum GN=midA PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 71/141 (50.35%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA-GTPVSW 700
            GP+S+  +++EVLTNPK G+Y+N+DVFG  GDFIT+PEVSQ+FGEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR    FK F +S+ +HLVE SP  +K Q  NL    +     N + +TI     G  V+W
Sbjct:  101 GPMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLFGEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASPANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTW 239          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_DROME (Protein midA homolog, mitochondrial OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.263e-35
Identity = 77/145 (53.10%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH----HNLKCMDENNANDNVEERTISSLAGTPVSWH 703
            GPI VAEYM EVLTNP+AG+Y+NRDVFG EGDFITSPE+SQ+FGE+VG+W +  W +MG P+   LVELGPGRGTL  D+L+  +KFK   E   +H+VE SP L K Q     ++ + + E+    + +E T +S  GT   WH
Sbjct:   64 GPIPVAEYMREVLTNPQAGYYMNRDVFGREGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFKQDAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWH 205          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_XENLA (Protein midA homolog, mitochondrial OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31
Identity = 73/156 (46.79%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  254 DH*AFQFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWH 703
            +H  F+ +  GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+TSPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F    +S  + +HLVE SP L  +Q   L  K ++ E ++N  V +  I+   G PV W+
Sbjct:   48 NHLIFKIKSTGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVTSPEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCDISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWY 202          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_BOVIN (Protein midA homolog, mitochondrial OS=Bos taurus PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 71/146 (48.63%), Postives = 98/146 (67.12%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWH 703
            GPI+VAEYM+EVLTNP  G+Y+NRD+ G EGDFITSPE+SQMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  +  ++  + +HLVE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+
Sbjct:   55 GPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEISQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLHLVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWY 199          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_XENTR (Protein midA homolog, mitochondrial OS=Xenopus tropicalis GN=TEgg135j01.1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  254 DH*AFQFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWH 703
            +H  F+ +  GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+TSPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F     S  + +HLVE SP L  +Q   L  K ++ E + N  V ++ I+   G PV W+
Sbjct:   45 NHLIFKIKSTGPITVSEYMREVLTNPVKGYYMHHDMLGEHGDFVTSPELSQIFGELLGVWCISEWMSAGKPKSLQLVELGPGRGTLTDDLLRVFSNFGRLLNSCDISVHLVEVSPKLSDIQAQRLTGKAIEVELDKNSPVYKKGITK-TGFPVCWY 199          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_DANRE (Protein midA homolog, mitochondrial OS=Danio rerio GN=zgc:153989 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 68/147 (46.26%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWH 703
            GPISVAEYM E LTNP  G+Y+  D+ GA GDFITSPE+SQ+FGE++GVW +  W   G+ + + LVELGPGRG+L +D+LR  S+ K       + IHLVE SP L ++Q    +C+  N      N++   R+ ++  G P+ W+
Sbjct:   42 GPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIFGELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEVSPKLSQVQ---AECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWY 185          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_HUMAN (Protein midA homolog, mitochondrial OS=Homo sapiens GN=C2orf56 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 67/146 (45.89%), Postives = 97/146 (66.44%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWH 703
            GPI+VAEYM+EVLTNP  G+Y+ RD+ G +GDFITSPE+SQ+FGE++G+W +  W   G+     LVELGPGRGTL+ D+LR  ++  +  ++  + +HLVE S  L ++Q   L   K   E NA   V  + ++  +G P+SW+
Sbjct:   55 GPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTK-SGIPISWY 199          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_MOUSE (Protein midA homolog, mitochondrial OS=Mus musculus PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 70/146 (47.95%), Postives = 98/146 (67.12%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWH 703
            GPI+VAEYM+EVLTNP  G+Y+++D+ G +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD+LR  S+  +   T ++ IHLVE S  L ++Q   L   K   E +A   V  + ++  +G P+SW+
Sbjct:   50 GPITVAEYMKEVLTNPAKGYYVHQDMLGEKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLGSVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPISWY 194          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_RAT (Protein midA homolog, mitochondrial OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWH 703
            GPI+VAEYM+EVLTNP  G+Y++ D+ G +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD+LR  S+  +   T  + IHLVE S  L ++Q   L       E +A   V  + ++  +G P+SW+
Sbjct:   50 GPITVAEYMKEVLTNPAKGYYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTADILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-SGIPISWY 194          
BLAST of CX295812 vs. ExPASy Swiss-Prot
Match: MIDA_CAEEL (Protein midA homolog, mitochondrial OS=Caenorhabditis elegans GN=ZK1128.1 PE=2 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  281 GPISVAEYMEEVLTNPKAGFY----INRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH 703
            GPI+VAEYM+  ++ P  G+Y     ++ VFGA+GDFITSPE++Q+FGEM+GVW        G      LVELGPGR  LM D+L   +KF +  + + +HLVE S  L   Q  +L      N+ D    R   +  G  + W+
Sbjct:   47 GPITVAEYMKTCVSAPLVGYYGQFSKDQKVFGAKGDFITSPELTQLFGEMIGVWVFHELANTGHKGSWQLVELGPGRAQLMNDVLNALAKFND--KDVSVHLVETSDALIDEQEKSLCIYTSKNSIDTPFIRKNKTRTGVNIYWY 189          
The following BLAST results are available for this feature:
BLAST of CX295812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MIDA_DICDI9.186e-3750.35Protein midA, mitochondrial OS=Dictyostelium disco... [more]
MIDA_DROME2.263e-3553.10Protein midA homolog, mitochondrial OS=Drosophila ... [more]
MIDA_XENLA1.982e-3146.79Protein midA homolog, mitochondrial OS=Xenopus lae... [more]
MIDA_BOVIN4.416e-3148.63Protein midA homolog, mitochondrial OS=Bos taurus ... [more]
MIDA_XENTR9.837e-3146.79Protein midA homolog, mitochondrial OS=Xenopus tro... [more]
MIDA_DANRE1.678e-3046.26Protein midA homolog, mitochondrial OS=Danio rerio... [more]
MIDA_HUMAN1.088e-2945.89Protein midA homolog, mitochondrial OS=Homo sapien... [more]
MIDA_MOUSE1.855e-2947.95Protein midA homolog, mitochondrial OS=Mus musculu... [more]
MIDA_RAT7.050e-2947.26Protein midA homolog, mitochondrial OS=Rattus norv... [more]
MIDA_CAEEL4.893e-2240.69Protein midA homolog, mitochondrial OS=Caenorhabdi... [more]
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Properties
Property NameValue
Genbank descriptionC05076B07SK DroRLeaf1 Citrus clementina cDNA clone C05076B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295812 ID=CX295812; Name=CX295812; organism=Citrus clementina; type=EST; length=709bp
TACAGCCTTCCAGTCCTCTTCGTGTCCTCTCATCAAAATACCCGTTCCCT
TTGCTTCAAAAATGGTCTCGATTCTCTTCTTCTTCTTCTTCAGAGTCTCA
AATCCCAAACAGTCATTCCGTCGAACCGTTAGATGACAATCGGAGTGAAC
ACGCTTCCACCGCCATTTCCATTGACCGCTCTGGCCTCTACAATCCTCCT
GAACATTCACATGAGCGGAAGTTGGAGTCTGAGCTTGTTAAGCATCTTAA
AGGGATCATTAAGCTTTCCAGTTCCGCGGTGGGCCAATCTCAGTTGCAGA
GTATATGGAGGAAGTTTTGACAAACCCAAAAGCTGGTTTCTATATCAATC
GTGATGTGTTTGGAGCAGAAGGTGATTTTATAACCTCCCCGGAAGTAAGC
CAGATGTTTGGCGAGATGGTTGGTGTATGGGCCATGTGTCTATGGGAGCA
AATGGGACAGCCAAACAGAGTGAACCTGGTTGAGTTAGGTCCAGGGAGAG
GAACTCTCATGGCTGATCTTCTTCGTGGTGCATCAAAGTTTAAGAACTTT
ACTGAGTCATTGCACATACACTTGGTAGAATGTAGTCCAACGTTACAGAA
GCTTCAGCACCACAACTTGAAATGTATGGATGAAAATAATGCCAATGATA
ATGTCGAAGAAAGGACTATTAGCTCATTAGCTGGAACACCTGTATCATGG
CATGCTGCG
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