CX295819

Overview
NameCX295819
Unique NameCX295819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295819_ssr37 microsatellite CX295819_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9355 contig Ccv1_Contig9355:126..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295819 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  268 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPS 726
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+      N+   +    R   S+EER+EEY RAR RIFS  S
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDS 302          
BLAST of CX295819 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  268 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFS 717
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFA 300          
BLAST of CX295819 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  268 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFS 717
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFA 300          
BLAST of CX295819 vs. ExPASy Swiss-Prot
Match: ARP21_MOUSE (cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 48/158 (30.38%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  268 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPS 726
            FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N   ++   +   +RS  +S+EER+EEY R R RIF+  S
Sbjct:  151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDS 298          
BLAST of CX295819 vs. ExPASy Swiss-Prot
Match: ARP21_HUMAN (cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  268 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR------SVEERKEEYDRARARIFSGPS 726
            FL+  L+N  R R+ +L+ME +I  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++ EES K       I +R N+      N+   +  P R      S+EER+EEY R R RIF+  S
Sbjct:  152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNSSIDKEDNQQN-RMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 300          
The following BLAST results are available for this feature:
BLAST of CX295819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R3HD1_HUMAN1.076e-1133.54R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
R3HD2_MOUSE1.406e-1131.41R3H domain-containing protein 2 OS=Mus musculus GN... [more]
R3HD2_BOVIN1.406e-1131.41R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
ARP21_MOUSE1.406e-1130.38cAMP-regulated phosphoprotein 21 OS=Mus musculus G... [more]
ARP21_HUMAN6.977e-1130.43cAMP-regulated phosphoprotein 21 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionC05076C02SK DroRLeaf1 Citrus clementina cDNA clone C05076C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295819 ID=CX295819; Name=CX295819; organism=Citrus clementina; type=EST; length=732bp
TCTCCTTCTCTCCTGATGCCCACAAGAAAGAAACCCTCTTCTTCTTCTTG
ATTTCTTCTATTTTTCATCCTGTCTGTGAAGCAAACAGAGAGGAAAACAA
GAAAGAATTAGAAGAAGAGGAGATACAACAGAGAGAAAGAGAAAGAAGAA
TTATAGTTAAGACTCTTATCAAAGGTCAAAGCCCATCCCCCACCCCCAAT
GGACTCAGCATCGTCAGCCACAGCTGCTGCTGCAATTTTTAATGAGAGAG
AGTCAATGGTGGATCCATTTTTGGTTGAGGCTCTCCAGAATCCTCGTCAT
CGTCTCACCATTCTGCGTATGGAACTTGATATTCAGAGGTTTTTGCAAAA
TCCTGATCAGCAGCATTTCGAGTTCCAACATTTTCCTACTTCTTATCTCC
GACTGGCTGCACACCGTGTTTCTCAACATTATGGGCTAGTAACTATGGTT
CAGGAAAATGGCATAGAAGGGCTGGGTAACAGGATTTTGGTGAGGAAAAC
AGCAGAAAGCAAATATCCTGCTGTCCGTTTATCTGAGATTCCTGCTAAGC
AGTCGGAAGAAAGTGATAAGCTTGAAAAGATTAAAATTGCCATCAGGCGT
AGGCCCAATGCTGGATGTGTTAATGGAGCAAATGAAACTGGGACGAAACG
AAGTCCTGTTAGAAGTGTGGAAGAGAGGAAGGAGGAGTATGATCGAGCAC
GTGCCCGCATCTTTAGTGGTCCTAGCAGTCCT
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