CX295841

Overview
NameCX295841
Unique NameCX295841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:240..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 284.263 bits (726), Expect = 4.816e-76
Identity = 132/217 (60.83%), Postives = 158/217 (72.81%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            CPAR FYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYCF +E   AS DYC+P+  +PC    +YYGRGP+QLSWNYNY  C           NNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG   +  V +RIGF+  +C  FG+ PG NLDC
Sbjct:  107 CPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPAS-DYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLL--NNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDC 320          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.390e-75
Identity = 132/217 (60.83%), Postives = 158/217 (72.81%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK YYGRGP+QLSWNYNY  C            NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG   N  V +R+GFF  +CG  G+  G+NLDC
Sbjct:   23 CPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNP-SSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLL--GNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDC 236          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.121e-75
Identity = 137/219 (62.56%), Postives = 159/219 (72.60%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTGG  W  AP G Y WGYC+NRE+  A  DYC  DPNYPC  GK Y+GRGP+QL+WNYNY +C           NNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC
Sbjct:   93 CPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLL--NNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDC 306          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.549e-74
Identity = 129/217 (59.45%), Postives = 156/217 (71.89%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYCF +E    SS+YC P+  +PC     YYGRGP+QLSWNYNY +C           NNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG   +  V +RIGF+  +C   G+ PG NLDC
Sbjct:   92 CPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNP-SSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLL--NNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDC 305          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.549e-74
Identity = 132/217 (60.83%), Postives = 158/217 (72.81%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC
Sbjct:  101 CQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 314          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.549e-74
Identity = 137/219 (62.56%), Postives = 160/219 (73.06%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTGG  W  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC
Sbjct:   95 CPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 309          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.887e-74
Identity = 131/217 (60.37%), Postives = 158/217 (72.81%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC
Sbjct:   96 CQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 309          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.713e-73
Identity = 128/215 (59.53%), Postives = 150/215 (69.77%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGPIQ+SWNYNY +C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG   +  V++RIGF+  +C  FGI  GDNLDC
Sbjct:   89 CQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDC 301          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.237e-73
Identity = 136/219 (62.10%), Postives = 158/219 (72.15%), Query Frame = 3
Query:    9 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTGG  W  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC
Sbjct:   73 CPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 287          
BLAST of CX295841 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.922e-73
Identity = 130/212 (61.32%), Postives = 155/212 (73.11%), Query Frame = 3
Query:   24 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 647
            FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC
Sbjct:   95 FYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
The following BLAST results are available for this feature:
BLAST of CX295841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_ARATH4.816e-7660.83Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA2.390e-7560.83Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_THECC3.121e-7562.56Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_BRANA1.549e-7459.45Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC1.549e-7460.83Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI1.549e-7462.56Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_TOBAC5.887e-7460.37Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_PEA1.713e-7359.53Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI2.237e-7362.10Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_SOLTU2.922e-7361.32Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05076D12SK DroRLeaf1 Citrus clementina cDNA clone C05076D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295841 ID=CX295841; Name=CX295841; organism=Citrus clementina; type=EST; length=740bp
ATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAG
GCAGCCAAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCG
TAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTG
GGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTT
AATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCC
ATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATT
ACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTG
AACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGC
AATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAG
TCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGG
CTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATG
TGGCTACGTTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCA
CTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCC
NACCACGGCCTTATGGCCTTATCTGATGGCACATCTATGTGATCATCATG
ATCACGTTTTAGTAAATAGCTTATAAAGCTACTTATAAAC
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