CX295847

Overview
NameCX295847
Unique NameCX295847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.163e-88
Identity = 164/181 (90.61%), Postives = 171/181 (94.48%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 543
            TITGLAVALKQATT EYKAYQEQV+SNC+KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QGTKLKDFVA  QS+ FQSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  337 TITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.346e-85
Identity = 159/181 (87.85%), Postives = 169/181 (93.37%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 543
            TITGLAVALKQATT EYKAYQEQV+SN +KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +GTKLKDFV   +S+  QSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  337 TITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.675e-85
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQ-SANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 543
            TITGLAVALKQATTPEY+AYQEQVLSN SKFAQ L E GYELVSGGT+NHLVLVN+KNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQGTKLKDFVAT + SA  +SEIAKLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  337 TITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.308e-81
Identity = 155/182 (85.16%), Postives = 169/182 (92.86%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 543
            TITGLAVALKQATT EYKAYQEQVLSN +KFAQTL+E GYELVSGGT+NHLVLVNLK K IDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QGTKLKDFV+  +S++  QSEIAKLRH+VEE+AKQFPTIGFEKETMKYKN
Sbjct:  336 TITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.089e-79
Identity = 150/180 (83.33%), Postives = 166/180 (92.22%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANF-QSEIAKLRHDVEEYAKQFPTIGFEKETMKY 537
            TITGLAVALKQATTPEY+AYQEQVLSN SKFA+ L E GY+LVSGGTENHLVLVNLKNK IDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++GTKLKDFV   Q++++ QSEI+KL+HDVEE+AKQFPTIGFEK TMKY
Sbjct:  337 TITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.850e-44
Identity = 92/173 (53.18%), Postives = 121/173 (69.94%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGFE 519
            I  +AVALKQA TP ++ Y  Q+L N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T  TKL+DF +   +      ++A LR  VE++A+ FP  GF+
Sbjct:  332 IAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.847e-43
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q+ +  LR +VE +A  FP  G
Sbjct:  309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.151e-43
Identity = 95/185 (51.35%), Postives = 124/185 (67.03%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE------MGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIK-----------SETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 504
            TI  LAVALKQA TPE++AYQ QVL+N +  A  L E      +GY +VSGGT+NHLVL++LK + IDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDFA+VA   D AV +AV+I            +E    ++K F+    +     EI +LR +VE +   +P
Sbjct:  336 TIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYP 520          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 90/177 (50.85%), Postives = 121/177 (68.36%), Query Frame = 1
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQG------TKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            TI+ LAVALKQA TPE+  YQ+QV+SN   F   LL+ G+ELVSGGT+NHL+L+NL N  IDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF KVA + D AVKL++ +KS+         +KL  F    Q  +    + KL  +V  +   FP  G
Sbjct:  310 TISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSF---KQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 87/171 (50.88%), Postives = 119/171 (69.59%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q  +  LR  VE +A  FP  G
Sbjct:  309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
The following BLAST results are available for this feature:
BLAST of CX295847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR7.163e-8890.61Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR4.346e-8587.85Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU5.675e-8589.01Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH1.308e-8185.16Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA2.089e-7983.33Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN2.850e-4453.18Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN1.847e-4350.88Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_NEUCR3.151e-4351.35Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_CANGA5.374e-4350.85Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB5.374e-4350.88Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionC05076E06SK DroRLeaf1 Citrus clementina cDNA clone C05076E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295847 ID=CX295847; Name=CX295847; organism=Citrus clementina; type=EST; length=738bp
ACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTA
TAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGA
CTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
CTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGA
AAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTG
GGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCT
CTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTT
CTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAG
GAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCAA
TCCGAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCAGTT
CCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGA
AAAACGCCACTGTACTAGAGCAGCAGAAGCCAGCCTGTATGAGCTTTTAT
TACACAGAGGCGACGAGGGATGAAATGTAACTTATGATGATGAGCCATGT
ATCAACTATCGACCCTGTGATTTGGCGCTTTTATGATACCATAGCAGCAA
ACTTGATTTAGATCACATTAATGTATATAAGTACTCTG
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