CX295881

Overview
NameCX295881
Unique NameCX295881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig546 contig Ccv1_Contig546:438..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295881 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    7 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKV 339
            RIG +E++FHC +C  C +T+LR  H CIEN    +CPIC E +  S     V+ CGH +H  CY EM+K + Y CP+C  S +DM+R W+++D E+  T MP +Y++  V
Sbjct:  109 RIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTV 218          
BLAST of CX295881 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.481e-25
Identity = 53/136 (38.97%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    7 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVG-SCLYL*SRHTVSVSFI--LCSVC 405
            RIG +E++FHC +C  C + +L+  H CIEN    +CPIC E +  S     V+ CGH +H  CY EM+K + Y CP+C  S +DM+R W+++D+E+  T MP +Y++  V   C     R TV    +   C +C
Sbjct:  109 RIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKIC 243          
BLAST of CX295881 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.977e-20
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   22 ENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDY 324
            ++YFHCK CG C   S+ N H CIE S   +CPIC EY+F+S      + C H +H  C+ E I R  Y CP C K++I+++  ++ +D EIE   MP  Y
Sbjct:  240 DDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYI-RTNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPY 339          
The following BLAST results are available for this feature:
BLAST of CX295881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_MOUSE1.196e-2544.14RING finger and CHY zinc finger domain-containing ... [more]
ZN363_HUMAN3.481e-2538.97RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO1.977e-2042.57Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionC05076H05SK DroRLeaf1 Citrus clementina cDNA clone C05076H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295881 ID=CX295881; Name=CX295881; organism=Citrus clementina; type=EST; length=481bp
GAGGGCAGAATCGGAGGTCGTGAGAATTATTTTCACTGCAAGAGATGTGG
GTCTTGCTATTCCACTAGTTTGCGCAATAATCATTTGTGTATAGAGAATT
CCATGCACCACCACTGCCCCATTTGTTATGAGTACCTATTTGACTCACTC
AGGAACACTACTGTTATGAAATGTGGGCACACCATGCATTGTGAATGTTA
CCATGAGATGATAAAGCGTGATAAATACTGTTGTCCCATATGCTCCAAGT
CTGTGATTGACATGTCCAGGACCTGGAAGAGAATAGATGAGGAGATAGAA
GCAACTGTGATGCCTGAGGACTACCGGCACAAGAAGGTAGGTTCCTGTTT
ATATTTATGATCCAGGCACACTGTATCTGTTTCTTTCATCTTATGCTCTG
TATGTCTTCCCAAGCTTCCTAAATTCAAAGGTGCTCCAGCAGTTAAATAG
CCACCTCCTGGATAAAAATTTAGTTTTGTTA
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