CX296259

Overview
NameCX296259
Unique NameCX296259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AK1H_ECOLI (Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 64/217 (29.49%), Postives = 106/217 (48.85%), Query Frame = 3
Query:   15 LMGCGGVGRQLLQNIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKL----VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            ++G GGVG  LL+ +   +S   N  + LRV GV++SK+L+        E   N   E+ + K +  +L  LI                 +L++   LL        VDC++S    +     +  G  +V  NKK  TS+M+ Y +L        R+  Y++ VGAGLPVI +L  +L++GD + +  G LSG+L Y+  ++++G   S+    A+
Sbjct:  470 VIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLE---NWQEELAQAK-EPFNLGRLI-----------------RLVKEYHLLNP----VIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAR 661          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH_HAEIN (Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae GN=thrA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14
Identity = 58/219 (26.48%), Postives = 105/219 (47.95%), Query Frame = 3
Query:    9 LVLMGCGGVGRQLLQNIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKLVSRPR----RIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            + L+G GGVG +L++ +   +   A   V +RV  +++S  +++  +    E   N L    +     S   +L+S                KL  + + +       FVDC+++     +  +A+  G  +V  NKK  T  +  Y++L    +    +  YE+ VGAGLPVI +L  +L++GD +    G LSG+L ++  ++E+G  LS+V   A+
Sbjct:  468 MFLVGVGGVGGELIEQVKRQKEYLAKKNVEIRVCAIANSNRMLLDENGLNLEDWKNDLENATQ----PSDFDVLLSFI--------------KLHHVVNPV-------FVDCTSAESVAGLYARALKEGFHVVTPNKKANTRELVYYNELRQNAQASQHKFLYETNVGAGLPVIENLQNLLAAGDELEYFEGILSGSLSFIFGKLEEGLSLSEVTALAR 661          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH_BUCAI (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=thrA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 59/231 (25.54%), Postives = 101/231 (43.72%), Query Frame = 3
Query:    9 LVLMGCGGVGRQLLQNIVSCRSLHANLGVHLRVVGVSDSKSLVVASDV------------FTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKL----VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            + L+G GG+G  LL  I+  +       + +++  +++SK +++  +              T++FN  LL+ +  +K +H S S++                                   VDC++S    E     +D    +V +NKK  TS    Y K+        ++  YE+ VGAGLPVI +L  +  SGD +    G LSG+L ++   +E+G  LSQ  + AK
Sbjct:  469 MFLIGIGGIGSTLLNQILKQKQFLDKKNIEIKICAIANSKKILLLDNTNDLSNWKNDFKKSTQKFNLELLNNL--IKNNHFSNSVI-----------------------------------VDCTSSQLLSEQYVNFIDNNFHVVTSNKKANTSEWNYYKKIRKSVAQTGKKFLYETNVGAGLPVIETLQNLFKSGDNLICFKGILSGSLSFIFGRLEEGILLSQATREAK 662          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH1_MAIZE (Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 62/222 (27.93%), Postives = 107/222 (48.20%), Query Frame = 3
Query:    6 ALVLMGCGGVGRQLLQNIVSCRS-LHANLGVHLRVVGVSDSKSLVVAS-DVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKLVSRPR----RIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            A+ ++G G +GR LL  +    + L  N+ + LRV+G++ S++++++   V   ++ + L +E     A+ ++L   +     E   F +  L                   VDC+A +         +  G  ++  NKK  +  ++ Y KL +  R       YE+TVGAGLP+I++L  +L +GD + RI G  SGTL Y+ +  E  +  S VV  AK
Sbjct:  563 AVGIIGPGLIGRTLLNQLKDQAAVLKENMNIDLRVMGIAGSRTMLLSDIGVDLTQWKEKLQTE-----AEPANLDKFVHHLS-ENHFFPNRVL-------------------VDCTADTSVASHYYDWLKKGIHVITPNKKANSGPLDRYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFEGARTFSDVVAEAK 759          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH_DAUCA (Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 61/221 (27.60%), Postives = 103/221 (46.61%), Query Frame = 3
Query:    6 ALVLMGCGGVGRQLLQNIVSCRS-LHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKLVSRPRRIR----YESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            A+ ++G G +G  LL  +    + L  N  + LRV+G++ S++++++        + +   E+ + K   + L   +    G    F+ S +                   VDC+A SE        +  G  ++  NKK  +  ++ Y KL +  RR      YE+TV AGLP+I +L  +L +GD + RI G  SGTL Y+ +  +   P S+VV  AK
Sbjct:  564 AVGIVGPGLIGATLLDQLRDQAAILKENSKIDLRVMGITGSRTMLLSET----GIDLSRWREVQKEKGQTAGLEKFVQHVRGNH--FIPSTV------------------IVDCTADSEVASHYHDWLCRGIHVITPNKKANSGPLDQYLKLRALQRRSYTHYFYEATVVAGLPIITTLQGLLETGDKILRIEGIFSGTLSYIFNNFKSTTPFSEVVSEAK 760          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH2_MAIZE (Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 58/221 (26.24%), Postives = 102/221 (46.15%), Query Frame = 3
Query:    6 ALVLMGCGGVGRQLLQNIVSCRS-LHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKLVSRPR----RIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            A+ ++G G +G  LL  + +  + L  N+ + LRV+G++ S +++++           LL +    +A+ + +   +        VF +  L                   VDC+A +         +  G  ++  NKK  +  ++ Y KL +  R       YE+TVGAGLP+I++L  +L +GD + RI G  SGTL Y+ +  E  +  S VV  A+
Sbjct:  560 AVGIIGPGLIGGALLNQLKNQTAVLKENMNIDLRVIGITGSSTMLLSDTGIDLTQWKQLLQK----EAEPADIGSFVHHLSDN-HVFPNKVL-------------------VDCTADTSVASHYYDWLKKGIHVITPNKKANSGPLDQYLKLRTMQRASYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFEGTRAFSDVVAEAR 756          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH_BUCAP (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=thrA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 53/217 (24.42%), Postives = 98/217 (45.16%), Query Frame = 3
Query:   15 LMGCGGVGRQLLQNIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKL----VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            L+G GGVG+ LL+ I+          + ++   +++SK L+   +      N N   E  +   +  +L++L       C                      +    +DC++     +     +  G  I+ +NKK  T +++ Y ++    +   ++  YE+ VGAGLPVI +L  + S+GD +    G LSG+L ++  ++E+G  LS+  K AK
Sbjct:  469 LIGIGGVGKALLKQILKQEKFLDQKNIKIQFRMIANSKKLLFLKN----SINLNNWEENFKKSKEKFNLTILNELLKNTCD---------------------SNSVIIDCTSDYILSKQYISFIKKGFHIITSNKKANTDSLKYYSEIRTTALKENKKFLYETNVGAGLPVINTLQSLFSTGDCLISFKGILSGSLSFIFGKLEEGVLLSEATKEAK 660          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH1_ARATH (Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 61/222 (27.48%), Postives = 101/222 (45.50%), Query Frame = 3
Query:    6 ALVLMGCGGVGRQLLQNIVSCRS-LHANLGVHLRVVGVS-DSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKLVSRPRRIR----YESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            A+ ++G G +G  LL  I    + L     + LRV+G++  SK L+  S +    + + +  E    KAD    +  + G       F+ + +                   VDC+A ++        +  G  +V  NKK  +  ++ Y K+    R+      YE+TVGAGLP+I++L  +L +GD + RI G  SGTL Y+ +     +  S+VV  AK
Sbjct:  554 AVGIIGPGLIGGTLLDQIRDQAAVLKEEFKIDLRVIGITGSSKMLMSESGIDLSRWRELMKEE--GEKADMEKFTQYVKG-----NHFIPNSV------------------MVDCTADADIASCYYDWLLRGIHVVTPNKKANSGPLDQYLKIRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFVGTRSFSEVVAEAK 750          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AK1H_SERMA (Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 57/226 (25.22%), Postives = 99/226 (43.81%), Query Frame = 3
Query:   15 LMGCGGVGRQLLQNIVSCRSLHANLGVHLRVVGVSDSKSLVV-ASDVFTKEFNDNL--------LSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKL----VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            ++G GGVG  L++ I   +       + LRV G+++S+ ++     +    + D L        L  + RL  ++  L+ +I                                  VDC++S    +     +  G  +V  NKK  TS+M  Y +L        R+  Y++ VGAGLPVI +L  +L++GD + R  G LSG+L ++  ++++G  LS     A+
Sbjct:  470 VIGVGGVGGALIEQIYRQQPWLKQKHIDLRVCGIANSRVMLTNVHGIALDSWRDALAGAQEPFNLGRLIRLVKEYHLLNPVI----------------------------------VDCTSSQAVADQYVDFLADGFHVVTPNKKANTSSMNYYQQLRAAAAGSHRKFLYDTNVGAGLPVIENLQNLLNAGDELVRFSGILSGSLSFIFGKLDEGLSLSAATLQAR 661          
BLAST of CX296259 vs. ExPASy Swiss-Prot
Match: AKH2_ARATH (Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 65/221 (29.41%), Postives = 102/221 (46.15%), Query Frame = 3
Query:    6 ALVLMGCGGVGRQLLQNIVSCRS-LHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKADHSSLSMLISGFGGECQVFLDSDLRGKLLEIASLLGISTGLAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTMEDYDKLVSRPRRIR----YESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAK 653
            A+ ++G G +G  LL  +    + L     + LRV+G++ SK +              LLS+I     D S    L++  G E      +DL     ++     I   +  VDC+A S         +  G  ++  NKK  +  ++ Y KL    R+      YE+TVGAGLP+I++L  +L +GD + RI G  SGTL Y+ +     +  S+VV  AK
Sbjct:  559 AMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKM--------------LLSDI---GIDLSRWRELLNEKGTE------ADLDKFTQQVHGNHFIPNSVV-VDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFNNFVGDRSFSEVVTEAK 755          
The following BLAST results are available for this feature:
BLAST of CX296259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AK1H_ECOLI4.967e-1529.49Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH_HAEIN2.465e-1426.48Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH_BUCAI9.367e-1425.54Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH1_MAIZE1.223e-1327.93Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH_DAUCA6.071e-1327.60Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH2_MAIZE3.013e-1226.24Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH_BUCAP8.767e-1224.42Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH1_ARATH1.145e-1127.48Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AK1H_SERMA1.145e-1125.22Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH2_ARATH1.495e-1129.41Bifunctional aspartokinase/homoserine dehydrogenas... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05138A01SK FerrChloL1 Citrus clementina cDNA clone C05138A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296259 ID=CX296259; Name=CX296259; organism=Citrus clementina; type=EST; length=653bp
ACGAGGCTTTGGTTCTGATGGGATGCGGAGGCGTCGGACGCCAGCTCCTC
CAGAACATTGTTTCCTGCCGATCACTTCATGCCAATCTGGGAGTGCATTT
GCGAGTGGTAGGAGTAAGTGACAGCAAGTCATTGGTTGTTGCGTCGGATG
TTTTCACAAAGGAGTTCAACGATAACCTCTTATCAGAAATTTGTCGCCTC
AAGGCGGACCACTCTTCTCTCTCAATGCTTATTAGTGGTTTCGGAGGTGA
ATGCCAAGTGTTTCTCGATTCTGATTTGAGAGGAAAGTTATTAGAAATTG
CATCTCTTCTGGGTATATCAACAGGTTTGGCCTTTGTTGATTGCTCTGCC
AGTTCTGAGACTGTTGAAATATTAACTCAAGCAGTTGATTTGGGTTGTTG
CATTGTCTTGGCAAACAAGAAGCCTCTTACATCTACAATGGAGGATTATG
ACAAATTGGTCTCACGTCCACGCCGTATTCGGTATGAGTCAACTGTTGGT
GCTGGCCTTCCTGTCATAGCGTCCTTAAATCGTATTCTTTCTTCAGGAGA
CCCTGTCCATCGTATTGTTGGAAGTCTGAGTGGTACATTGGGGTATGTAA
TGAGCGAGGTTGAAGATGGGAAGCCACTTAGTCAAGTTGTTAAGGCTGCT
AAA
back to top