CX296290

Overview
NameCX296290
Unique NameCX296290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296290_ssr28 microsatellite CX296290_ssr28:28..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296290_ssr419 microsatellite CX296290_ssr419:419..439. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296290_ssr609 microsatellite CX296290_ssr609:609..626. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig682 contig Ccv1_Contig682:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC9_ARATH (Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 68/137 (49.64%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  189 SVSTSSKRAVRGPSINTT---DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +++T+   ++R  S+ T    + V  +V ENAVIV  +RGCCM HVV+RLLLGLG NP V E+DE + E  VL  LE I                  V+ PAV++GG+LFGGLDR+MATHI+GEL+P+LKE  ALWL
Sbjct:   12 NMTTTVGESLRPLSLKTQGNGERVRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDE-EREDEVLSELENIGVQGGGGT----------VKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGALWL 137          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS3_ORYSJ (Monothiol glutaredoxin-S3 OS=Oryza sativa subsp. japonica GN=GRXS3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXX--GSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V   V E  V+V  +RGCCM+HV +RLLLG GANP V EV +  D A+++DA               + D      V FPAVFIGG+L GGLDR+MA H+ GEL+PVLK+A ALWL
Sbjct:   21 VRRAVEEKPVVVVGRRGCCMAHVARRLLLGQGANPAVLEVGDDADPAALVDAALQARRRKDGGDKAAAGDGGGGAAVAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS5_ORYSJ (Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. japonica GN=GRXS5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 71/165 (43.03%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  132 MQQAIPYKSWQPF---DPLSHS----SVSTSSKRAVRGPSINTTDV-----VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            M QAIPY S +P+   +P +       V T++  A RG             V   V+E+ V+V  +RGCC+ HVVKRLL GLG NP V+EV     EA    AL+ +V               +    PAVF+GGKL GGLDR+MA HI+GEL+P+LK+A ALWL
Sbjct:    1 MYQAIPYSSTRPWLRPEPAASVVDVVKVETTTAVAGRGGEAEVVGEEEAAEVRRAVAESPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVA---GEA----ALKGVVPAGG-----------EAAALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS9_ORYSJ (Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica GN=GRXS9 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 64/153 (41.83%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  132 MQQAIPYKSWQPFDPLSHSSVSTSSKRAVRGPSINTTDVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            M QAIPY + + +   S  +  T++      P     + V   V+E  V+V  + GCC+SHVVKRLL GLG NP V+EV    + A V+                        V  PAVF+GG+L GGLDR+MA HI+GEL+P+LKEA ALWL
Sbjct:    1 MYQAIPYNANRAWPAASRPA--TAAAAPPPPPPRGEEEEVRRAVAECPVVVVGRSGCCLSHVVKRLLQGLGVNPAVHEVAGEAELAGVVAG-------------------GGGVALPAVFVGGRLLGGLDRLMAVHISGELVPILKEAGALWL 132          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRS13_ARATH (Monothiol glutaredoxin-S13 OS=Arabidopsis thaliana GN=GRXS13 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  180 SHSSVSTSSKRAVRGPSINTTDVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            S SS+S  +  + +  SI+     + +V ENAV+VFA+RGCC+ HV KRLLL  G NP V E+ E D+                    ++D+    K + P ++IGGKLFGGL+ +MA HI G+L+P L++A ALWL
Sbjct:   33 SSSSLSWLTSGSPKPTSISNKRSSNLVVMENAVVVFARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDN-------------------NNYDNIVSDKEKLPMMYIGGKLFGGLENLMAAHINGDLVPTLRQAGALWL 150          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V+ M S NAV+VF+  GCCM HVVKRLLLGLG  P VYE+D+    A +  AL  ++                +   P VF+GG+L GG++++MA HI G L+P+LK+A ALWL
Sbjct:   92 VARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPG-------------QPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 192          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V  + SE+AV+VF+   CCM H VKRL  G+G +P V+E+D       +  AL  +V        +           P VFIGGKL G +DR+MA HI G L+P+LKEA ALWL
Sbjct:   32 VERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAA----------VPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 51/114 (44.74%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V  + SE+AV+VF+   CCM H VKRL  G+G +P V+E+D       +  AL  +V        S           P VFIGGKL G +DR+MA HI G L+P+LKEA ALWL
Sbjct:   29 VERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPP-------VVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            + SM +ENAV++F+   CCM H +KRL  G+G +P V+E+D       +  AL  ++       G            P VFIGGK+ G ++R+MA+HI G L+P+LK+A ALWL
Sbjct:   34 IESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLL-------GCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGALWL 140          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            D+++ MV E  V++++K  CCMSH +K LL   GANP VYE+DE      +  AL  +                     P VFIGG+L GG + +M+ H+ G LIP+LK A ALW+
Sbjct:    2 DMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGC---------------SPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102          
The following BLAST results are available for this feature:
BLAST of CX296290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
GRXC9_ARATH2.345e-2749.64Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 P... [more]
GRXS3_ORYSJ4.140e-2450.86Monothiol glutaredoxin-S3 OS=Oryza sativa subsp. j... [more]
GRXS5_ORYSJ7.808e-2343.03Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. j... [more]
GRXS9_ORYSJ1.020e-2241.83Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. j... [more]
GRS13_ARATH1.332e-2241.61Monothiol glutaredoxin-S13 OS=Arabidopsis thaliana... [more]
GRXC9_ORYSJ3.875e-2246.49Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]
GRXC5_ORYSJ3.070e-1943.86Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC3_ORYSJ3.070e-1944.74Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
GRXC8_ARATH1.990e-1840.35Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]
GRXS2_ARATH7.563e-1839.66Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05138D10SK FerrChloL1 Citrus clementina cDNA clone C05138D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296290 ID=CX296290; Name=CX296290; organism=Citrus clementina; type=EST; length=630bp
CCACTCACTACTTAATTACCCTTTTAATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTTTCAAATTTTA
ATTAAATTATTCTGCAAAATAATTAATAACCATGCAGCAAGCTATCCCCT
ACAAATCGTGGCAACCCTTTGATCCCCTGAGCCATTCATCGGTATCGACG
AGCAGCAAGAGGGCCGTACGAGGGCCTAGCATTAATACCACCGATGTTGT
CAGCAGCATGGTGTCCGAGAATGCGGTGATCGTGTTCGCGAAGCGCGGGT
GCTGCATGAGCCACGTGGTGAAGCGTCTGCTCTTGGGGCTTGGTGCGAAC
CCTTGTGTTTACGAAGTTGATGAAGGGGATGACGAGGCTAGTGTTCTGGA
TGCATTGGAAATGATTGTTAATAATAATAATAATAATAATGGTAGTCACG
ATGATCGTGATCGCCAGAAGGTGCAGTTCCCAGCTGTGTTTATTGGGGGG
AAGTTGTTTGGCGGGTTGGACAGAATCATGGCTACCCATATCACAGGTGA
ACTGATTCCCGTTTTGAAAGAAGCTAAGGCCTTGTGGCTCTGACGGATCT
TTTTCTTTTTCTTCTTCTTCTTCTTCTTTT
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