CX296312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 9.853e-88 Identity = 154/170 (90.59%), Postives = 163/170 (95.88%), Query Frame = -2 Query: 146 QSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 655 +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 120 KSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 2.867e-87 Identity = 153/170 (90.00%), Postives = 162/170 (95.29%), Query Frame = -2 Query: 146 QSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 655 +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 117 KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 3.521e-69 Identity = 128/155 (82.58%), Postives = 141/155 (90.97%), Query Frame = -2 Query: 194 MQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 658 ++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK TL+LAEIKH+RLAMVAFL FA+QA TGKGP++ AT Sbjct: 120 IKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 191.43 bits (485), Expect = 3.426e-48 Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = -2 Query: 197 LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 643 L PY+EVFGL RFRECELIHGRWAMLA LGAL E TG++W +AGKVEL +G+SY G LPFSIT LIWIEV+++G EF RNSE +PEKR YPGG FDPL LA++ E++A L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A Sbjct: 121 LAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31 Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = -2 Query: 149 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 616 L+R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K L++ EIK+ RLA++A +GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30 Identity = 81/170 (47.65%), Postives = 103/170 (60.59%), Query Frame = -2 Query: 149 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 646 PL T +RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DPEK+ YPGG F DPLG + DP K L+L EIK+ RLAM+AF+GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 70 PLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.287e-26 Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = -2 Query: 161 RFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 610 +++ ELIH RWAML G + E L W G + L++G++ Y G+ +P ++ + EV+++G E+ R + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP +L Sbjct: 109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25 Identity = 74/160 (46.25%), Postives = 92/160 (57.50%), Query Frame = -2 Query: 176 RFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 610 R R E+IHGRWAML LG + E L G+ W AG EG YLG P SI ++ +VL++G +E R + LD LYPGG++FDPLGLA DP A L++ EIK+ RLAM + GF VQA+VTGKGPL N HL DP+ Sbjct: 94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.186e-24 Identity = 74/161 (45.96%), Postives = 94/161 (58.39%), Query Frame = -2 Query: 173 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 610 R RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R + P E LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.549e-24 Identity = 75/161 (46.58%), Postives = 95/161 (59.01%), Query Frame = -2 Query: 179 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 610 R+RE ELIH RWA+L LG LT E L+ G+ W AG +G +YLG SI + ++V+++G E R SE LD LYPGG F DPLGLA DP+ A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N HL+DP Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237 The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bpback to top |