CX296361

Overview
NameCX296361
Unique NameCX296361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296361 vs. ExPASy Swiss-Prot
Match: Y5392_ARATH (Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  236 VFCRNFGEVSYKSDVYSYGMMVFEMTGGKNNANVAVDRSSDIYFPHWVYKRLELEEDLGLQGIE-NEEDKEYARKMILVSLWCIQNNPSDRPAMNRVVEMLEGSLDSLQIPPRP 574
            V  R +G +S+KSDVYSYGM+V +M G +N         S  YFP W+YK LE  +   + G E NEED +  +KMILVSLWCI+  PSDRP MN+VVEM+EGSLD+L++PP+P
Sbjct:  667 VVSRMYGGISHKSDVYSYGMLVLDMIGARNKVETTTCNGSTAYFPDWIYKDLENGDQTWIIGDEINEEDNKIVKKMILVSLWCIRPCPSDRPPMNKVVEMIEGSLDALELPPKP 780          
BLAST of CX296361 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 2
Query:  236 VFCRNFGEVSYKSDVYSYGMMVFEMTGGKNNANVAV--DRSSDIYFPHWVYKRLELEEDLGLQGIE-NEEDKEYARKMILVSLWCIQNNPSDRPAMNRVVEMLEGSLDSLQIPPRP 574
            VF R +G VS+KSDVYS+GM+V +M G ++   V      +S  YFP W+YK LE  E   + G E  +E+KE A+KMI+V LWCIQ  PSDRP+MNRVVEM+EGSLD+L+IPP+P
Sbjct:  669 VFSRMYGRVSHKSDVYSFGMLVIDMIGARSKEIVETVDSAASSTYFPDWIYKDLEDGEQTWIFGDEITKEEKEIAKKMIVVGLWCIQPCPSDRPSMNRVVEMMEGSLDALEIPPKP 784          
BLAST of CX296361 vs. ExPASy Swiss-Prot
Match: Y5005_ARATH (Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  260 VSYKSDVYSYGMMVFEMTGGKNN-ANVAVDRSSDI---YFPHWVYKRL---ELEEDLGLQGIE-NEEDKEYARKMILVSLWCIQNNPSDRPAMNRVVEMLEG 541
            +S KSDVYSYG+++ EM GG+ + + V V  +      YFP  V +++   ++ E +  + IE NE D+E   K++ V+LWCIQ     RP M  V+EMLEG
Sbjct:  289 ISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKKKLEYFPRIVNQKMRERKIMEIVDQRLIEVNEVDEEEVMKLVCVALWCIQEKSKKRPDMTMVIEMLEG 390          
The following BLAST results are available for this feature:
BLAST of CX296361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5392_ARATH8.260e-3054.39Probable receptor-like protein kinase At5g39020 OS... [more]
Y5393_ARATH2.403e-2956.03Probable receptor-like protein kinase At5g39030 OS... [more]
Y5005_ARATH2.951e-1141.18Probable receptor-like protein kinase At5g20050 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05139F04SK FerrChloL1 Citrus clementina cDNA clone C05139F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296361 ID=CX296361; Name=CX296361; organism=Citrus clementina; type=EST; length=707bp
GAGGAACATCAAGATCGCTGATAGCTGCCTACTTGCTGGTCCTCAATGGT
TACAAAAATGTCTACCACTTAGAAGGAGGGCTCTATAAATGGTTCAAGGA
GGAATTACCAGAAGTTTCTGAAGAGTAAAGATCGACGGTCTTTTAAGCCG
ATACTCCACCAAATTACAAATAATACATTAACATTGGAGTGGCAACAAAA
TTTAGCATTTGCCTCGTGCCGAATTCGGCACGAGGGTTTTCTGCAGGAAC
TTTGGAGAAGTCTCTTACAAGTCGGATGTCTATAGCTATGGAATGATGGT
TTTTGAAATGACTGGAGGAAAAAACAATGCCAATGTTGCAGTTGATCGTA
GCAGTGACATATATTTTCCACATTGGGTTTACAAGCGTCTTGAACTAGAG
GAAGACCTTGGATTGCAAGGCATTGAAAATGAAGAGGATAAAGAATATGC
AAGGAAGATGATACTAGTGAGTTTGTGGTGCATACAGAACAACCCCTCGG
ACCGGCCAGCAATGAATCGGGTGGTGGAAATGTTGGAAGGAAGCCTTGAT
TCCTTACAAATTCCCCCCAGGCCTTTCTTGCTTTCTTCAGGATCACAGCC
AGATTCTTCAAGTATCCTAGTGCGCCAGACCGAGTCTTCAATGGCCACAT
GTTAAAACTGAATGAACCCTTTGACATTTCTTTAGCATGATAGCCTCTCA
GCTGTTT
back to top