CX296373

Overview
NameCX296373
Unique NameCX296373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig154 contig Ccv1_Contig154:130..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 4.902e-54
Identity = 103/129 (79.84%), Postives = 113/129 (87.60%), Query Frame = -2
Query:  162 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTA 548
            RYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA++  ++A
Sbjct:   46 RYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.361e-54
Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = -2
Query:  159 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTAT 548
            RYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA++  + A+
Sbjct:   46 RYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.177e-53
Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   46 RYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.513e-52
Identity = 99/125 (79.20%), Postives = 106/125 (84.80%), Query Frame = -2
Query:  174 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 548
            RYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS          +  +A RK
Sbjct:   46 RYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.072e-51
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = -2
Query:  174 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 548
            RYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS          +  +A+RK
Sbjct:   46 RYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.817e-39
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL+DV+A KQ IPF RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:   46 RYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.702e-36
Identity = 75/107 (70.09%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548
            RYL DV+  KQ IPF RF  GVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:   46 RYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 6.020e-36
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 KYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 6.020e-36
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 KYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 KYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL172_ARATH4.902e-5479.8460S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH8.361e-5479.2360S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU3.177e-5391.5960S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU3.513e-5279.2060S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_MAIZE5.072e-5178.4060S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL17_PODCA5.817e-3974.7760S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO2.702e-3670.0960S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_HUMAN6.020e-3669.1660S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA6.020e-3669.1660S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT7.862e-3669.1660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05139G07SK FerrChloL1 Citrus clementina cDNA clone C05139G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bp
CGAGCCATGGCAAGACAGAATAAACTAAATACTGAACCAACAGAAGTCTT
CAGGAACAAGTATCTTGTAAACAAAATTGTATGTTGTCATGGTAGTACAA
AGGGGGAAAAAAGAGAAATCAAGTCAGGACTCCCAACATTCAAGATAAGG
CACCACTATGTAGCTGTCCTCGGTTTCCTGGAAGCCAACTGGGTCTCCGG
CTCTTTCTTCACAGGTTCCTCCTTTTCTGAGAGTGTCAACTCAATATGAC
ATGGGGAAGACATGTATGGGTTAATCCTTCCATGTGCACGATAAGTCCGA
CGCCTCTGCTTCTGGGCTTGATTCACTTGGATGTGAGAAATGTAAAGCGC
GTCCACATCTAAGCCTTTCACCTCTGCATTACTCTCAGCATTCTTGAGTA
AATCCAGAATGAACTTTGCAGATTTAACCGGCCAGCGACCTTGACCATTT
GGATTACGGTTTTTAGCCTGTGCAGTTCGCCCAACACCGCGACAGAAGCG
GGTGAATGGTATGGCTTGCTTGTGAGCCATAACATCCTCCAAGTACCTT
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