CX296373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 4.902e-54 Identity = 103/129 (79.84%), Postives = 113/129 (87.60%), Query Frame = -2 Query: 162 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTA 548 RYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS ETQLA++ ++A Sbjct: 46 RYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 8.361e-54 Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = -2 Query: 159 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTAT 548 RYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS ETQLA++ + A+ Sbjct: 46 RYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 3.177e-53 Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 RYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS Sbjct: 46 RYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 3.513e-52 Identity = 99/125 (79.20%), Postives = 106/125 (84.80%), Query Frame = -2 Query: 174 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 548 RYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS + +A RK Sbjct: 46 RYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 5.072e-51 Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = -2 Query: 174 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 548 RYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS + +A+RK Sbjct: 46 RYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 5.817e-39 Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 RYL+DV+A KQ IPF RFC GVGR AQAK + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ +S Sbjct: 46 RYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.702e-36 Identity = 75/107 (70.09%), Postives = 85/107 (79.44%), Query Frame = -2 Query: 231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548 RYL DV+ KQ IPF RF GVGR AQAKN + P QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A RRRTYRAHGRINPYM+SPCHIE+ L Sbjct: 46 RYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 150.214 bits (378), Expect = 6.020e-36 Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 46 KYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 150.214 bits (378), Expect = 6.020e-36 Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 46 KYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36 Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 46 KYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bpback to top |