CX296403

Overview
NameCX296403
Unique NameCX296403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296403_ssr124 microsatellite CX296403_ssr124:124..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296403_ssr545 microsatellite CX296403_ssr545:545..556. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig688 contig Ccv1_Contig688:1..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296403 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 3 
Query:  243 NVNFVSGFPSTKSL----LANGHSSYLAFVKLATK------SSISIK-GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIR 620
            ++N  S  PST SL    L+   ++ L  +   T       S+ SIK   GK +A +IS E DLL++ NGN  ++  +  DD+     L+ D+++ G LAAD+AP                 PT GFSSIPEAIEDIR
Sbjct:    3 SINLSSSSPSTISLSRSRLSQSSTTLLHGLHRVTLPSNHPLSTFSIKTNTGKVKAAVISREDDLLSFTNGNTPLSNGSLIDDRTEE-PLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIR 139
The following BLAST results are available for this feature:
BLAST of CX296403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RIBBA_ARATH5.087e-1137.68Riboflavin biosynthesis protein ribBA, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC05140D02SK FerrChloL1 Citrus clementina cDNA clone C05140D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296403 ID=CX296403; Name=CX296403; organism=Citrus clementina; type=EST; length=620bp
GCCTCGTGCCGAATTCGGCACGAGGCGAAGAACACATGCTTCAATTTAAA
GACGAAACACAAACAGCGAAGACTCATTCAGCTTTGTTGTTGTTAGAAGA
GAGATAGAGATTACTGGAGAGAAAGAGAGAGAGAGAGAGGCTTAAACCCA
TAACAAATACAAGGGGAAAATAATTAATGGCGGCGTCTCTCAACATATCT
TCTCCTTCAACTTCAGCTCTCTCTTCTCCTCCAGCACGCAGAAATGTGAA
TTTTGTTAGTGGATTTCCCAGTACGAAGTCACTTTTGGCAAATGGGCACT
CTTCATATTTGGCCTTTGTAAAGCTAGCTACTAAATCATCCATTAGTATC
AAGGGTGTCGGCAAAACTAGAGCTACACTGATATCTGGAGAAGGTGACCT
TTTAGCTTATCCCAATGGCAATAACCTTGTGGCCGAAAGTACTGGTGCTG
ATGATCAATTGGTGGGGATTGAGTTACAACCGGATGCAATAGCATTTGGA
GCACTTGCAGCAGATACCGCTCCCACAACTTTTGGATTTTCCAGTGATGA
TGATGAATTTGATTTGGATAGCCCTACAGAAGGTTTTTCTTCTATCCCCG
AGGCCATTGAAGACATTCGC
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