CX296444
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296444 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27 Identity = 67/124 (54.03%), Postives = 76/124 (61.29%), Query Frame = -3 Query: 155 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXALVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 520 MA ITAS S + + LVH + SSSP+LGLP+ + KV CS+E KPS E+ T N ALVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY YA Sbjct: 1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124
BLAST of CX296444 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20 Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = -3 Query: 158 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXA-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 520 MA+ TAS T S L+ KP+ VA S+PVLGLP K G VRCSME +KQ + + +G LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW + Y Sbjct: 1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119
BLAST of CX296444 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13 Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = -3 Query: 158 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXALVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 520 MA ++A+ TS + +VL LGLP + +VRC+ SK+ + ALVD+RMSTEGTGL GLSNNLLGWILLGVFGLIW+LY Y Sbjct: 1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109 The following BLAST results are available for this feature:
BLAST of CX296444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296444 ID=CX296444; Name=CX296444; organism=Citrus clementina; type=EST; length=627bpback to top |