CX296444

Overview
NameCX296444
Unique NameCX296444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296444 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 67/124 (54.03%), Postives = 76/124 (61.29%), Query Frame = -3
Query:  155 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXALVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 520
            MA ITAS   S +  + LVH   +  SSSP+LGLP+   + KV CS+E KPS  E+ T  N                     ALVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of CX296444 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = -3
Query:  158 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXA-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 520
            MA+ TAS  T S     L+ KP+ VA S+PVLGLP    K G VRCSME   +KQ + + +G                     LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of CX296444 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  158 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXALVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 520
            MA ++A+  TS +  +VL             LGLP    +   +VRC+     SK+ +                        ALVD+RMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of CX296444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL3.960e-2754.03Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH1.611e-2051.22Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.118e-1341.46Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC05141A11SK FerrChloL1 Citrus clementina cDNA clone C05141A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296444 ID=CX296444; Name=CX296444; organism=Citrus clementina; type=EST; length=627bp
ACGAGGTTTTTTTTGAAACCAAAAGATAGATTTTACTAAAACAAATTTAA
GGAAAAAGGCCAAACTCTTTACATTTCTACCAACAAGGGGTTTGGCTTTA
GACTTCGGACTGTTAGAGGGACAATCCGGACTCTTCATCTTCATCAAGAC
TGGAAGCGTAAGGAATGTAGAGGGCCCAGATGAGACCAAAAACACCCAAC
AGAATCCACCCAAGGAGGTTGTTGCTCAAGCCAAATGGAAGCCCTGTTCC
TTCAGTGCTCATTCTATCATCAACAAGAGCCATGGCTGGGCTTGACATTG
TTGCCGCGCATGCTGCTGCCAGCAGTGACGCACTCATTCCCACGTTTGTT
TTGCTCTCTTGCTTTGAAGGCTTTTCCTCCATCGAACATCTCACTTTCCC
CTTCACTGCCTTTGCTGGCAATCCAAGAACAGGGGATGATGAAGCTACAA
TGGATGGCTTGTGTACAAGAACCGAGGGTGTAATCGATGATGTTCCTACG
CTAGCAGTGATGGCGGCCATTTTTCTTGGAGTTGGAAGACGAGATGGAGT
GAAGAATGAGCACAAAGATGTTTGCTGTGGTCAGGGTATACCTCGTGCCG
AATTCGGCAACAGGGGGGGGGCCCGGT
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