CX296478

Overview
NameCX296478
Unique NameCX296478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length115
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:102..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_WHEAT3.644e-13100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN3.644e-13100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.644e-13100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.644e-13100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.644e-13100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.644e-13100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.644e-13100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.644e-13100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE3.644e-13100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO3.644e-13100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05141E11SK FerrChloL1 Citrus clementina cDNA clone C05141E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296478 ID=CX296478; Name=CX296478; organism=Citrus clementina; type=EST; length=115bp
AGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAA
GCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCAT
CTTTGCTGGCAAACA
back to top