CX296480

Overview
NameCX296480
Unique NameCX296480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296480 vs. ExPASy Swiss-Prot
Match: AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -3 
Query:  559 HDFRLINQVAHEIWVCENQAVTRWEGDIMDFKQHLKAKAGLSD 687
            HDFRLINQVAHEIWVCE Q +T+W GDIMDFK+HLKAKAGL D
Sbjct:  553 HDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAKAGLED 595
The following BLAST results are available for this feature:
BLAST of CX296480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB1F_ARATH3.784e-1683.72ABC transporter F family member 1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC05141F05SK FerrChloL1 Citrus clementina cDNA clone C05141F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296480 ID=CX296480; Name=CX296480; organism=Citrus clementina; type=EST; length=689bp
AGGCCTCGTGCCGAATTCGGCACGAGGTAAAAATTTAAGATACCCAACTT
CCCATTAGGGAAACAACTGAAGAAAAGAACACTATTTAGGGACACCCAGA
CCTCTGATAGTAATACTGACGAAAAAGTTGGGTGGCCAAAGAAACATTGC
GTATTCCGCTTTTCATAAAATATTATAATCTCTCTCGAGTACAACATATA
ATAAAAGTCCAATAGCACATAAACATTCGCGTCTAAACCTAAATATATGT
TTAGCCATATGTCATCTTCTTGGCCAAGGAACCAAGGAATATGATAAGGA
AGGGCAAATGTAACCAAGAACAAAAATATCACCTAACAACTTCGCAGATA
ATTATGGAATGAACCAGCGGCATACAATAAATAAGCCGTCGTCCCTCCTG
CTGCTACATAAAACTTTCGTCATAATCCCCACCTTGGGGAAAACATCAAC
CAGTGGTGGCGATCACTTGGGCCTACTACAGTCTTAAGCCAAATGTGTAA
TAAAAATAGCAGCACTATTACATTGTCTTCAAATTCATCCTATGGTGATC
TTCTTTCAATCAGATAGACCAGCCTTGGCCTTCAGGTGCTGCTTAAAGTC
CATAATGTCACCCTCCCACCGGGTAACGGCTTGATTTTCACACACCCATA
TTTCATGGGCTACCTGGTTTATGAGCCTGAAATCATGGC
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