CX296482

Overview
NameCX296482
Unique NameCX296482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12319 contig Ccv1_Contig12319:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296482 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.273e-77
Identity = 148/213 (69.48%), Postives = 172/213 (80.75%), Query Frame = 1
Query:   61 MASMALKSFTGLRQSPQEQQHPHFIAQALPRQQ---KFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 690
            MAS+ALK+FTGLRQS  E  +   ++++LP  Q   + R++A+K+SP++  RNLRV             ETLA+ G+ETFLIERK+DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+    PYVL+YT YD    G GEKRTLEVDAVIGADGAN
Sbjct:    1 MASIALKTFTGLRQSSPEN-NSITLSKSLPFTQTHRRLRINASKSSPRVNGRNLRVAVVGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGAN 212          
BLAST of CX296482 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.924e-76
Identity = 146/214 (68.22%), Postives = 171/214 (79.91%), Query Frame = 1
Query:   67 SMALKSFTGLRQSPQEQQHPHFIAQ-----ALP-RQQKFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 690
            ++ LKSFTGLRQS  EQ +  F++      +LP R+   RV+AA+ +PKL+NR LRV             ETLAQ G+ET LIERK+DNCKPCGGAIPLCMVGEF+LPLDIIDR+VTKMKMISPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERAEK+GA+VINGLF+KMD P N++ PY L+YTEYDG  G  G K+T+EVDAVIGADGAN
Sbjct:    4 TVTLKSFTGLRQSSTEQTN--FVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGGGPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGAN 215          
BLAST of CX296482 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 117/182 (64.29%), Postives = 133/182 (73.08%), Query Frame = 1
Query:  151 RQQKFRVSAAKTSPKL-TNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-GEKRTLEVDAVIGADGAN 690
            R  +    AA +SPKL + R LRV             E LA+ GVET LIERKLDNCKPCGGAIPLCMV EFDLPLD++DRKV KMKMISPSNVAVDIG TL PHEYIGMVRREVLDAYLR RAE  GA V+NGLF++ + P+     YV++Y  YD + G   GEKRT EVDA++GADGAN
Sbjct:   30 RMARLVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGAN 211          
BLAST of CX296482 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.877e-47
Identity = 94/144 (65.28%), Postives = 109/144 (75.69%), Query Frame = 1
Query:  259 ETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 690
            E L + G+ET+L ERKLDN KPCGGAIPLCMV EFDLP +IIDR+V KMKMISPSN+ V+IGQTLK  EYIGM RREVLD +LRERAEK G  VING   K+D+P     PY L+Y ++    G  GE + L+VD VIGADGAN
Sbjct:   19 EILVKAGIETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGAN 161          
BLAST of CX296482 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 54/144 (37.50%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  265 LAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHE--YIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 690
            +A+ G++  L++R     KPCGGAIP  ++ +FD+P  ++  K+T  +MISP+   VDI     P E  ++GMV RE  D +LRERA K GA  + G +++++  R+  +  V++  +        GE+   E   VIGADGAN
Sbjct:   21 MARAGLKVALLDRA-GRIKPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDI-----PIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIE--RDSGKTVVVWRDKV------TGEEMKAETRVVIGADGAN 150          
The following BLAST results are available for this feature:
BLAST of CX296482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_TOBAC2.273e-7769.48Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH1.924e-7668.22Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ1.061e-5864.29Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY31.877e-4765.28Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA3.231e-1537.50Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionC05141F07SK FerrChloL1 Citrus clementina cDNA clone C05141F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296482 ID=CX296482; Name=CX296482; organism=Citrus clementina; type=EST; length=691bp
AGGCCTCGTGCCGAATTCGGCACGAGGGCTCCACACTCACCCCTGACTGA
AGCTCCCACAATGGCATCAATGGCTCTCAAATCCTTCACTGGCCTCCGCC
AATCACCGCAAGAACAACAGCACCCCCACTTCATCGCTCAAGCCCTCCCA
CGTCAGCAAAAATTCCGAGTCTCCGCGGCAAAAACCAGTCCAAAACTCAC
CAACCGCAACCTCCGAGTGGCGGTCATCGGGGGCGGCCCAGCAGGCGGAG
CTGCCGCCGAGACGCTCGCACAAAATGGCGTCGAAACGTTCCTGATCGAG
CGTAAGCTCGACAACTGCAAGCCCTGCGGCGGGGCCATCCCTCTCTGCAT
GGTGGGGGAGTTTGACCTGCCGCTGGACATAATCGACCGGAAGGTGACGA
AGATGAAGATGATATCGCCGTCGAACGTGGCGGTGGACATCGGGCAGACG
CTGAAGCCGCACGAGTATATCGGGATGGTGAGGCGGGAGGTTCTGGACGC
GTATTTGAGGGAGAGGGCGGAGAAGAACGGGGCGAGCGTGATTAACGGGT
TATTCATGAAGATGGATTTGCCGAGGAACTTTGAGCAGCCGTACGTTTTG
TATTATACGGAGTACGATGGGACAAAGGGCGGCGTCGGTGAGAAGAGGAC
GCTGGAGGTTGATGCTGTTATCGGAGCTGATGGTGCTAACT
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