CX296558

Overview
NameCX296558
Unique NameCX296558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:1001..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.356e-33
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  290 RRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETAD+NTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  291 RRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.710e-32
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.846e-32
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  290 RRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.328e-32
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.328e-32
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = -3
Query:  232 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 429
            RRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIAETT+LWK
Sbjct:  290 RRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTLLWK 355          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 8.265e-32
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = -3
Query:  232 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 429
            RRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  290 RRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.079e-31
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTGKHET DINTF WGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  290 RRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
The following BLAST results are available for this feature:
BLAST of CX296558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA1_ALNGL3.356e-3397.01Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA_PINSY2.841e-3292.54Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_LOTJA2.841e-3295.52Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA2_VITVI3.710e-3295.52Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA2_PHAVU4.846e-3292.54Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_VITVI6.328e-3295.52Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLN12_ORYSJ6.328e-3295.45Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA5_MAIZE8.265e-3295.45Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA3_MEDSA1.079e-3191.04Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA_VIGAC1.410e-3194.03Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]

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Properties
Property NameValue
Genbank descriptionC05146B02SK FerrChloL1 Citrus clementina cDNA clone C05146B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296558 ID=CX296558; Name=CX296558; organism=Citrus clementina; type=EST; length=431bp
TCCATAATGTTATTAAATTAAATGTTTACATTATTCAACCCAATAGGACA
GCAGGAAGCAATGAACCCACTGTTGCAAATACAGGGGCAGAGATTGAAAC
AAGACAAAAGCTGAACTACTACTAATAAAGCATCCTTAGCAGACCACAAT
TCTGTCGTGAACTCGTGAATCCTGAGTAAAGCCAGCAGATCAAACAAAAT
ATTTCAAAGGTTGCTAGAGGAGCATTCATGGCTTCCACAGAATAGTGGTT
TCTGCAATCATGGAGGTGACAACATATGGATCCATGTTAGAAGCAGGTCT
CCTGTCCTCAAAGTAACCCTTTCCTTCTTTCTCTGTGTCTCGTCCAACAC
GGATTGATGCCCCACGGTTAGCAACACCCCATTTGAAAGTGTTGATGTCA
GCTGTTTCATGTTTGCCAGTGAGTCGGCGTT
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