CX296561

Overview
NameCX296561
Unique NameCX296561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:965..1299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_XENLA (Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.818e-31
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +C+ETRP+NQGSRLTA+ELV+++IP            M++ +V+AV+VGADRV ANGDT NKIGTY LA+ AK+H I FYVAAP TS DL+L +G  IVIEER + EL
Sbjct:  196 FCTETRPYNQGSRLTAYELVYEKIPATLITDSMASVTMRERKVTAVVVGADRVVANGDTANKIGTYQLAIIAKYHGIPFYVAAPSTSCDLSLPTGGSIVIEERPSHEL 303          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_XENTR (Methylthioribose-1-phosphate isomerase OS=Xenopus tropicalis GN=mri1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.506e-31
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +C+ETRP+NQGSRLTA+ELV+++IP            ++D +V+AV+VGADRV ANGDT NKIGTY LA+ A++H I FYVAAP TS DL+L +G  IVIEER + EL
Sbjct:  196 FCTETRPYNQGSRLTAYELVYEKIPATLITDSMASAAIRDRKVTAVVVGADRVVANGDTANKIGTYQLAITARYHGIPFYVAAPSTSCDLSLPTGGSIVIEERPSHEL 303          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 3
Query:    3 AYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            A+C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NK+GTY LA+ AK H I FYVAAP +S DL L +G+EI+IEER  +EL
Sbjct:  197 AFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQEL 305          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_BOVIN (Methylthioribose-1-phosphate isomerase OS=Bos taurus GN=MRI1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 3
Query:    3 AYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            A+C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NK+GTY LA+ AK H I FYVAAP +S DL L +G+EIVIEER  +EL
Sbjct:  197 AFCTETRPYNQGARLTAFELVYEQIPATLIADSMAAAAMAHQGVSAVVVGADRVVANGDTANKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETGREIVIEERPDQEL 305          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.475e-30
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NKIGTY LA+ AK H I FYVAAP +S DL L +G+EIVIEER ++EL
Sbjct:  198 FCTETRPYNQGARLTAFELVYEKIPATLITDSMAAAAMVHQGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPSQEL 305          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.221e-30
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +C+ETRP+NQG+RLTAFELV+++IP            M    VSAV+VGADRV ANGDT NKIGTY LA+ AK H + FYVAAP +S DL L +G+EIVIEER ++EL
Sbjct:  198 FCTETRPYNQGARLTAFELVYEQIPATLITDSMAAAAMAHRGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQEL 305          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_DESHY (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain Y51) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRPF QG+RLTA EL++D IP           LM+ G +  VIVGADR+AANGDT NKIGTYSLA+ A  H I FYVAAP ++IDL + SGQ+I IEER+ KEL
Sbjct:  185 YAGETRPFLQGARLTALELMNDHIPVTLIADNMAGFLMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKVPSGQDIPIEERNPKEL 292          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_DESHD (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRPF QG+RLTA EL++D IP           LM+ G +  VIVGADR+AANGDT NKIGTYSLA+ A  H I FYVAAP ++IDL + SGQ+I IEER+ KEL
Sbjct:  185 YAGETRPFLQGARLTALELMNDHIPVTLIADNMAGFLMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKVPSGQDIPIEERNPKEL 292          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_SOLUE (Methylthioribose-1-phosphate isomerase OS=Solibacter usitatus (strain Ellin6076) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.160e-28
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRPF QG+RLT +EL  D IP            MK GR+  V+VGADR+AANGD  NK+GTYS+A+ AK + + FYVAAP++++DLTLSSG++I IEERSA E+
Sbjct:  183 FADETRPFLQGARLTVWELQQDSIPTTLITDNMAGHFMKAGRIGCVVVGADRIAANGDVANKVGTYSVAVLAKENGVPFYVAAPISTLDLTLSSGEQIPIEERSAAEV 290          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_CALS8 (Methylthioribose-1-phosphate isomerase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.739e-28
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP+ QG+RLTAFEL  D IP           LMK G++  VIVGADR+A NGDT NKIGTYSL++ AK H I FY++AP+++ID  + SG EI IEERS  E+
Sbjct:  183 YVDETRPYLQGARLTAFELSEDGIPNTVICDNMAGYLMKLGKIDCVIVGADRIALNGDTANKIGTYSLSVLAKHHGIPFYISAPISTIDFNIKSGSEIPIEERSEDEI 290          
The following BLAST results are available for this feature:
BLAST of CX296561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_XENLA3.818e-3160.19Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_XENTR8.506e-3159.26Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_HUMAN1.895e-3059.63Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]
MTNA_BOVIN1.895e-3060.55Methylthioribose-1-phosphate isomerase OS=Bos taur... [more]
MTNA_RAT2.475e-3061.11Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_MOUSE4.221e-3060.19Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_DESHY3.574e-2960.19Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_DESHD3.574e-2960.19Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_SOLUE5.160e-2855.56Methylthioribose-1-phosphate isomerase OS=Solibact... [more]
MTNA_CALS86.739e-2856.48Methylthioribose-1-phosphate isomerase OS=Caldicel... [more]

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Properties
Property NameValue
Genbank descriptionC05146B05SK FerrChloL1 Citrus clementina cDNA clone C05146B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296561 ID=CX296561; Name=CX296561; organism=Citrus clementina; type=EST; length=335bp
GAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCACT
GCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACTC
TGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCG
GAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAACC
TACAGCCTTGCATTATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGC
TGCTCCACTGACGTCAATTGATTTAACCCTTTCTTCTGGACAAGAGATTG
TCATAGAGGAGAGGTCTGCTAAAGAATTGTTGTGC
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