CX296607

Overview
NameCX296607
Unique NameCX296607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13482 contig Ccv1_Contig13482:711..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = -1
Query:  198 SSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 521
            S S ++S P   S P+N A + S GLVVD   P+TS+Q+RLADGTRL++ FN HHT+ D+  FIDASRPG ++ YQL  MGFPPK L +  QTIEQAG+AN+VVIQKF
Sbjct:  314 SGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524
            GS++      +  +      + +S  +++DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD +QT+++A L N+V++Q+
Sbjct:  261 GSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524
            GS++      +  +      + +S  +++DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD +QT+++A L N+V++Q+
Sbjct:  261 GSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524
            GS++      +  +      + +S  + +DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  261 GSTAPQILNTSSPAQQAENEAKASSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.935e-15
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524
            GS++      +  +      + +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  261 GSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.935e-15
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524
            GS++      +  +      + +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  261 GSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524
            GS++      +  +      + +S  + +DE+ P T++QIRLADG RL+  FN +H I DI  FI  +RP  A    + M  FP K L D  QT+++A L N+V++Q+
Sbjct:  260 GSTAPQVLSTSSPAQQAENEAKASSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = -1
Query:  201 STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 515
            ST +S    D + +N A      +++D+++P+T +QIRLADG+RL+  FN  H I D+  FI  SRP  A    + +  FP K L D T T+++A + N+V++Q+
Sbjct:  231 STPSSPEEEDKSILNAA------VLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.708e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  201 STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 515
            ST +S    D + +N A      +++D+++P+T +QIRLADG+RLI  FN  H I D+  FI  SRP  A    + +  FP K L D + T++ A + N+V++Q+
Sbjct:  231 STPSSPEEEDKSILNAA------VLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329          
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBX2B_XENLA (UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  201 PTVDSTPVNTASSSSEGLV----VDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 497
            P + STP +        L     +DE++P+T +QIRLADGTRLI  FNL H I D+  FI  +R   A+     +  FP   L D TQT+E+A + N+V++Q+
Sbjct:  246 PEIISTPSSPEEEHKRFLNAEVDLDEHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELTDETQTLEEADILNTVILQR 348          
The following BLAST results are available for this feature:
BLAST of CX296607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
UBAX1_ARATH1.065e-3160.19UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_PONAB4.803e-1638.89NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN4.803e-1638.89NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
NSF1C_BOVIN1.825e-1538.89NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
NSF1C_RAT6.935e-1537.96NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE6.935e-1537.96NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
NSF1C_CHICK1.545e-1437.04NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2... [more]
UBX2B_MOUSE3.442e-1438.10UBX domain-containing protein 2B OS=Mus musculus G... [more]
UBX2B_RAT1.708e-1338.10UBX domain-containing protein 2B OS=Rattus norvegi... [more]
UBX2B_XENLA2.231e-1340.78UBX domain-containing protein 2B OS=Xenopus laevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146G07SK FerrChloL1 Citrus clementina cDNA clone C05146G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296607 ID=CX296607; Name=CX296607; organism=Citrus clementina; type=EST; length=524bp
CGAGGCCTCGTGCCGAATTCGGCAAGAGGCGGCACGAGGATCAACCCATC
CATTACCAAGGTGTCGTCTACAAAAACCTAATCTCTCTCTACATACAAGT
AAATGGAGAGACTCTTTTTCTTTTTTTAAAGTGCAATAAAATATTTTCAG
TTAATAATAGGCAACTGAGAGCGTTTGAAGAGCAGAGTGCTTGCTCAGAA
TTTCTGGATAACCACCGAATTGGCAAGGCCCGCCTGCTCTATGGTCTGAG
TTCGATCAGCGAGAACTTTTGGAGGAAATCCCATCATCTGCAGCTGATAG
TTCCTAGCAGTCCCAGGCCTAGATGCATCAATGAAGGAATGAATGTCGCT
GATTGTGTGGTGAAGATTGAAGTGTGCTATCAAGCGGGTTCCGTCCGCCA
ACCTGATCTGAACTGATGTCGACGGAAGGTTTTCATCAACAACCAGACCC
TCAGAAGAGGAGGAAGCAGTGTTGACCGGGGTGGAATCAACAGTTGGTTC
AGAAGCTGCAGTACTGCTGCTACC
back to top