CX296607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31 Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = -1 Query: 198 SSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 521 S S ++S P S P+N A + S GLVVD P+TS+Q+RLADGTRL++ FN HHT+ D+ FIDASRPG ++ YQL MGFPPK L + QTIEQAG+AN+VVIQKF Sbjct: 314 SGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16 Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = -1 Query: 201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524 GS++ + + + +S +++DE+ P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD +QT+++A L N+V++Q+ Sbjct: 261 GSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16 Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = -1 Query: 201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524 GS++ + + + +S +++DE+ P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD +QT+++A L N+V++Q+ Sbjct: 261 GSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15 Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = -1 Query: 201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524 GS++ + + + +S + +DE+ P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V++Q+ Sbjct: 261 GSTAPQILNTSSPAQQAENEAKASSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 6.935e-15 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = -1 Query: 201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524 GS++ + + + +S ++++E P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V++Q+ Sbjct: 261 GSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 6.935e-15 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = -1 Query: 201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524 GS++ + + + +S ++++E P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V++Q+ Sbjct: 261 GSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14 Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = -1 Query: 201 GSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 524 GS++ + + + +S + +DE+ P T++QIRLADG RL+ FN +H I DI FI +RP A + M FP K L D QT+++A L N+V++Q+ Sbjct: 260 GSTAPQVLSTSSPAQQAENEAKASSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14 Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = -1 Query: 201 STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 515 ST +S D + +N A +++D+++P+T +QIRLADG+RL+ FN H I D+ FI SRP A + + FP K L D T T+++A + N+V++Q+ Sbjct: 231 STPSSPEEEDKSILNAA------VLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.708e-13 Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = -1 Query: 201 STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 515 ST +S D + +N A +++D+++P+T +QIRLADG+RLI FN H I D+ FI SRP A + + FP K L D + T++ A + N+V++Q+ Sbjct: 231 STPSSPEEEDKSILNAA------VLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329
BLAST of CX296607 vs. ExPASy Swiss-Prot
Match: UBX2B_XENLA (UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13 Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = -1 Query: 201 PTVDSTPVNTASSSSEGLV----VDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 497 P + STP + L +DE++P+T +QIRLADGTRLI FNL H I D+ FI +R A+ + FP L D TQT+E+A + N+V++Q+ Sbjct: 246 PEIISTPSSPEEEHKRFLNAEVDLDEHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELTDETQTLEEADILNTVILQR 348 The following BLAST results are available for this feature:
BLAST of CX296607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296607 ID=CX296607; Name=CX296607; organism=Citrus clementina; type=EST; length=524bpback to top |