CX296619

Overview
NameCX296619
Unique NameCX296619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296619_ssr535 microsatellite CX296619_ssr535:535..546. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 87/115 (75.65%), Postives = 96/115 (83.48%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 358
            +PDVILIGTGS            RK GKAVRVVSFVSWELF++QSD YKESVLP+ V+ARVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct:  627 KPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVLPSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.842e-42
Identity = 88/114 (77.19%), Postives = 95/114 (83.33%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 355
            +PDVILIGTGS            RK GK VRVVSFVSWELFDEQS  YKESVLP++V+ARVSIEAGSTFGW KIVGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct:  405 KPDVILIGTGSELEIAAKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.366e-39
Identity = 83/114 (72.81%), Postives = 92/114 (80.70%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 355
            +PDVILIGTGS            +K GK VRVVSFV WEL+DEQS  YKESVLP++V+ARVSIEAGSTFGW+K VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct:  627 KPDVILIGTGSELEIAVKAAEELKKEGKTVRVVSFVCWELYDEQSAEYKESVLPSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKTC_MAIZE (Transketolase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 79/112 (70.54%), Postives = 92/112 (82.14%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 349
            +PD+I++GTGS            RK GK VRVVSFVSWELFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+GIT E++I AAK
Sbjct:  562 KPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 673          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 358
            +PDVILIGTGS            RK GK VRVVS V WELF EQS+ Y+E+VLP+ V+ARVS+EAGSTFGWE+ +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AAKE+C
Sbjct:  562 KPDVILIGTGSELEIAARAGDELRKEGKKVRVVSLVCWELFAEQSEKYRETVLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAAKEIC 676          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.083e-36
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 358
            +P+VIL+GTGS            RK GK VRVVS VSWELF EQS  YKE VLP+ V+ARVS+EAGSTFGWE+ VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAKE+C
Sbjct:  565 KPEVILMGTGSELEIAARAGEELRKEGKKVRVVSLVSWELFGEQSKEYKEMVLPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAKELC 679          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKT_ANASP (Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 2
Query:   17 PDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 355
            PD+ILIGTGS            +  GK VRVVS  +W+LFD Q  AYKESVLP AV+ R+++EA S+FGW K +GS+G A+ IDRFGASAP G   ++FG + + V+  AK++
Sbjct:  556 PDLILIGTGSELSLCVTAAEKLKAEGKKVRVVSLAAWDLFDAQDAAYKESVLPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAKAKQL 668          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKT2_VIBF1 (Transketolase 2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tkt2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 355
            QP++ILI TGS               GKAVRVVS  S + FD+Q +AY+E+VLP+AV+ R++IEAG    W K VG  GK IG+  FG SAPA +++K FG T E V+  AKE+
Sbjct:  548 QPELILIATGSEVELAIEAAAQLTAEGKAVRVVSMPSTDAFDKQDEAYREAVLPSAVTKRIAIEAGIADFWYKYVGFGGKIIGMTTFGESAPADELFKMFGFTTENVVNTAKEL 661          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKT2_VIBCH (Transketolase 2 OS=Vibrio cholerae GN=tkt2 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 355
            QP++ILI TGS               GKAVRVVS  S + FD+Q  AY+E+VLPAAV+ R++IEAG    W K VG  G+ IG+  FG SAPAG+++K FG T E V+  AKE+
Sbjct:  549 QPELILIATGSEVELAVAAYEQLSAEGKAVRVVSMPSTDAFDKQDAAYREAVLPAAVTKRIAIEAGIADFWYKYVGFGGRIIGMTSFGESAPAGELFKLFGFTTENVVKQAKEL 662          
BLAST of CX296619 vs. ExPASy Swiss-Prot
Match: TKT1_VIBCH (Transketolase 1 OS=Vibrio cholerae GN=tkt1 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 2
Query:   14 QPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 355
            QP++ILI TGS               GKAVRVVS  S + FD+Q  AY+E+VLPAAV+ R++IEAG    W K VG  G+ IG+  FG SAPAG+++K FG T E V+  AKE+
Sbjct:  550 QPELILIATGSEVELAVAAYEQLSAEGKAVRVVSMPSTDAFDKQDAAYREAVLPAAVTKRIAIEAGIADFWYKYVGFGGRIIGMTSFGESAPAGELFKLFGFTTENVVKQAKEL 663          
The following BLAST results are available for this feature:
BLAST of CX296619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
TKTC_SPIOL2.252e-4275.65Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKTC_CRAPL3.842e-4277.19Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKTC_SOLTU1.366e-3972.81Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKTC_MAIZE6.781e-3970.54Transketolase, chloroplastic OS=Zea mays PE=1 SV=1[more]
TKT7_CRAPL3.365e-3866.09Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTA_CRAPL1.083e-3666.09Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
TKT_ANASP1.327e-2651.33Transketolase OS=Anabaena sp. (strain PCC 7120) GN... [more]
TKT2_VIBF11.518e-2249.12Transketolase 2 OS=Vibrio fischeri (strain ATCC 70... [more]
TKT2_VIBCH1.518e-2250.00Transketolase 2 OS=Vibrio cholerae GN=tkt2 PE=3 SV... [more]
TKT1_VIBCH1.518e-2250.00Transketolase 1 OS=Vibrio cholerae GN=tkt1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05146H08SK FerrChloL1 Citrus clementina cDNA clone C05146H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296619 ID=CX296619; Name=CX296619; organism=Citrus clementina; type=EST; length=675bp
ATTCTTCTGGTAACAACCTGATGTCATTTTGATTGGAACTGGTTCTGAAT
TGGAAATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCT
GTAAGAGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGA
TGCCTACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCA
TTGAAGCTGGATCTACATTTGGGTGGGAGAAGATTGTTGGAAGCAAAGGA
AAGGCCATCGGCATTGACCGATTCGGTGCTAGTGCACCAGCAGGCAAAAT
ATACAAGGAGTTTGGTATCACCGCGGAGGCTGTTATCACTGCAGCCAAAG
AAGTCTGCTAAGCTTGGTTAGTCAAAAACTTCTTATTATTCCATATGCAT
TTGGGAATTGGTGATTACAGTGAAGAGACCATTCCCAAGAGAGTTGCTTC
ATTATGGTCTCTCTTGTTTTAATAAAAGCAAGATTATTTTTCTTCCTTTT
GCTTATTATTCCACTGCAGAGCATCGTAGATTGAAGAGAGAGAGAGGGAG
AGAGAGTAGGGCTTGTTCATGTTCATGAATTTGTATCAAACTCTTGGACC
TATCTTGAGATTTGTAATGTTTCCTGTTGATTTTGATGCAAATTTGCTCG
TCCATCATCAAAAAAAAAAAAAAAA
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