CX296639

Overview
NameCX296639
Unique NameCX296639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length218
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig900 contig Ccv1_Contig900:211..428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.999e-32
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLP VK+LLR+DFHVAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRALLNESN+FVGDK AYAL
Sbjct:   47 VFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.452e-32
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLPLVK+ LR DFHVAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERRALL ESN+FVGDKVAYAL
Sbjct:   47 VFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.295e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLPLVKS LRSDF VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL
Sbjct:   47 VFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 2.886e-31
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLP+VKS LR +FHVAAQNCWV+KGGAFTGEVSAEMLVNL +PWVILGHSERRALL ESN+FVGDKVAYAL
Sbjct:   47 VFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.284e-30
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLP+VKS LR +  VAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYAL
Sbjct:   47 VFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.936e-27
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLP+VK+ LR +  VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERR+LL ES++FVG+KVAYAL
Sbjct:   47 VFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 2.528e-27
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VFLP VK  LR +  VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL
Sbjct:   47 VFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYAL 118          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.003e-24
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3
Query:   48 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERRALLNE+N+FVGDKVAYAL
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYAL 59          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.934e-23
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 215
            VFLP   + L+ +  VAAQNCWV+KGGAFTGEVSA+ML NL I WVILGHSERR LL ESN+FVG K AYA
Sbjct:   47 VFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYA 117          
BLAST of CX296639 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.643e-18
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 3
Query:    3 VFLPLVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 218
            V++  VKS L     ++AQNCW+ KGGAFTGE+S E L +L   WVILGHSERR ++ E N+F+G K AYAL
Sbjct:  113 VYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYAL 184          
The following BLAST results are available for this feature:
BLAST of CX296639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
TPIS_COPJA1.999e-3290.28Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_PETHY4.452e-3291.67Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH1.295e-3190.28Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE2.886e-3187.50Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ9.284e-3086.11Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU1.936e-2777.78Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_SECCE2.528e-2780.56Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_LACSA2.003e-2489.47Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP4.934e-2371.83Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL1.643e-1856.94Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionC05801B06SK FerrChloL1 Citrus clementina cDNA clone C05801B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296639 ID=CX296639; Name=CX296639; organism=Citrus clementina; type=EST; length=218bp
TTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTT
GCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGT
TAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTC
ATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGAT
AAAGTTGCTTATGCACTT
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