CX296644

Overview
NameCX296644
Unique NameCX296644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig307 contig Ccv1_Contig307:178..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296644 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 69/112 (61.61%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  386 KCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCTHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 721
            KCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCC H+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  333 KCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX296644 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = -3
Query:  365 KCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCTHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 721
            KCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCC H+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  341 KCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX296644 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 63/119 (52.94%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  362 CGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCTHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 718
            CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCC HDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  223 CGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX296644 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = -3
Query:  389 KCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCTHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 721
            KCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCC  DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  346 KCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX296644 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 48/116 (41.38%), Postives = 58/116 (50.00%), Query Frame = -3
Query:  386 KCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCTHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 721
            KCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CC  +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  363 KCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CX296644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ1.825e-4061.61Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH3.112e-4056.30Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC6.715e-3552.94Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ5.506e-2950.43Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.006e-2241.38Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionC05801B11SK FerrChloL1 Citrus clementina cDNA clone C05801B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296644 ID=CX296644; Name=CX296644; organism=Citrus clementina; type=EST; length=723bp
CTCGCGCCGAATTCGGCACGAGGGTGATTCAAGAAGAATCGTTAAATATC
AATTCATAAAAGCCTCCGCTGAATGACGCCAGGGATTTGGTAGAGGACAT
TGGAAATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAACGCAG
ATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAATAAATATTT
AACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCAGTA
GAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATATTTTCA
TCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATTAAGCA
CTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGT
GCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGG
TCCCAGCACGAACATTACAGATGGGATAGTCATGTGTGCAGCAGCTATAG
TGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAA
GCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGC
AAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAGATGGAGGG
GACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGC
CTCCATGGCAATTCCACACTTGC
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