CX296662

Overview
NameCX296662
Unique NameCX296662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14542 contig Ccv1_Contig14542:658..1347. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296662 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = -1 
Query:  457 KVVESIAQDDSRHLLPRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIK 684
            K++E ++ +D R  LPRFQ ENLE+NK L+ER+ E+AV+KGCT SQLALAWVHHQG+DVCPIPGTTKIENLNQN+K
Sbjct:  227 KLLEDMSNEDYRKYLPRFQAENLENNKNLYERICEMAVRKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNMK 302
[Close]
BLAST of CX296662 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = -1 
Query:  328 KVVESIAQDDSRHLLPRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPXXXXXXXXXXXXXAVRGHRYGGVTPTYEDSETPPL 684
            K  +   + D R   PR+Q EN   N +L  ++ ++A     T  QL+LAW+  QGDD+ PIPGT +++ L +N  AL VKL+               V G RY     +    +TPP+
Sbjct:  220 KSPDDFPEGDFRRKAPRYQKENFYKNLELVTKIEKIATANNITPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPM 338
The following BLAST results are available for this feature:
BLAST of CX296662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
A115_TOBAC2.157e-2772.37Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YAKC_SCHPO1.501e-1233.61Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionC05801D07SK FerrChloL1 Citrus clementina cDNA clone C05801D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296662 ID=CX296662; Name=CX296662; organism=Citrus clementina; type=EST; length=690bp
ATTACTCCATTTTGATTTATTTATTGTTTCTCATATATTTGTATAAACAC
AGTACATTATTTTGCTGCTCAAAGCAGAAGAGCAGAAGATACATTGATTT
AGTTTTGCTCACAACACTACATACGAACTCAATACAATATTCACTAAACA
CTTGTGAAAAGTGCAGAAAGGTACTAATAGGGTGTCCTATCAGAAGACAC
GATGACTTTATCTTTACTCACAATACAGTAATTTTACCCACAACAAAACC
TTGGAACTAAATGCAATTGCAAAATCGGTACTAAGAAGGCAGACTACCAA
TGCCCTTTATGAAGGTTTCCATGAAGACAGTGGAGGAGTTTCAGAATCTT
CATAGGTAGGAGTGACACCCCCATATCGATGACCCCGTACAGCATCTGCT
GAAGCAATGGATTCAAGCTCAGCAATTTCTTCCGGAGTTAGTTTCACTGA
CAGAGCTTTAATATTTTGATTCAGGTTTTCAATCTTGGTGGTTCCAGGAA
TTGGACACACATCATCTCCTTGGTGATGAACCCATGCTAATGCAAGCTGA
GATCGGGTGCATCCTTTCTTTACAGCTAGTTCATTAACACGTTCAAATAG
CTTTTTGTTATGCTCTAAATTTTCAGGTTGGAACCTGGGTAGAAGATGTC
TAGAATCATCCTGTGCAATGCTTTCAACCACTTTGGCCCG
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