CX296692

Overview
NameCX296692
Unique NameCX296692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296692_ssr414 microsatellite CX296692_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.566e-32
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 234
            SWELFDEQS  YKESVLP++V+ARVSIEAGSTFGW KIVGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct:  441 SWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 237
            SWELF++QSD YKESVLP+ V+ARVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct:  663 SWELFEKQSDEYKESVLPSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.804e-30
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    4 WELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 234
            WEL+DEQS  YKESVLP++V+ARVSIEAGSTFGW+K VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct:  664 WELYDEQSAEYKESVLPSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKTC_MAIZE (Transketolase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.887e-30
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 228
            SWELFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+GIT E++I AAK
Sbjct:  598 SWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 673          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 56/78 (71.79%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    4 WELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 237
            WELF EQS+ Y+E+VLP+ V+ARVS+EAGSTFGWE+ +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AAKE+C
Sbjct:  599 WELFAEQSEKYRETVLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAAKEIC 676          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.734e-28
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 237
            SWELF EQS  YKE VLP+ V+ARVS+EAGSTFGWE+ VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAKE+C
Sbjct:  601 SWELFGEQSKEYKEMVLPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAKELC 679          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKT_ANASP (Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 234
            +W+LFD Q  AYKESVLP AV+ R+++EA S+FGW K +GS+G A+ IDRFGASAP G   ++FG + + V+  AK++
Sbjct:  591 AWDLFDAQDAAYKESVLPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAKAKQL 668          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKT_BACHD (Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 228
            SW+ F+ QS  YKE VLP+ V+AR++IE GS+ GW K VG++G  + IDRFGASAP  +I +EFG T + V+  AK
Sbjct:  585 SWDRFEAQSAEYKEEVLPSDVTARLAIEMGSSLGWAKYVGNQGDVVAIDRFGASAPGERIMEEFGFTVQHVVARAK 660          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKT_STRP8 (Transketolase OS=Streptococcus pyogenes serotype M18 GN=tkt PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 201
            S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  652 SQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
BLAST of CX296692 vs. ExPASy Swiss-Prot
Match: TKT_STRP6 (Transketolase OS=Streptococcus pyogenes serotype M6 GN=tkt PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 201
            S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  652 SQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
The following BLAST results are available for this feature:
BLAST of CX296692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TKTC_CRAPL5.566e-3285.90Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKTC_SPIOL9.495e-3282.28Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKTC_SOLTU6.804e-3081.82Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKTC_MAIZE8.887e-3080.26Transketolase, chloroplastic OS=Zea mays PE=1 SV=1[more]
TKT7_CRAPL5.760e-2971.79Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTA_CRAPL3.734e-2873.42Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
TKT_ANASP3.168e-1953.85Transketolase OS=Anabaena sp. (strain PCC 7120) GN... [more]
TKT_BACHD1.019e-1753.95Transketolase OS=Bacillus halodurans GN=tkt PE=3 S... [more]
TKT_STRP88.628e-1759.70Transketolase OS=Streptococcus pyogenes serotype M... [more]
TKT_STRP68.628e-1759.70Transketolase OS=Streptococcus pyogenes serotype M... [more]

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Properties
Property NameValue
Genbank descriptionC05801G04SK FerrChloL1 Citrus clementina cDNA clone C05801G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296692 ID=CX296692; Name=CX296692; organism=Citrus clementina; type=EST; length=558bp
TCTTGGGAGCTTTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGTGCT
TCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAAGCTGGATCTACATTTG
GGTGGGAGAAGATTGTTGGAAGCAAAGGAAAGGCCATCGGCATTGACCGA
TTCGGTGCTAGTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTATCAC
CGCGGAGGCTGTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGTTAG
TCAAAAACTTCTTATTATTCCATATGCATTTGGGAATTGGTGATTACAGT
GAAGAGACCATTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTTTTA
ATAAAAGCAAGATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCAGAG
CATCGTAGATTGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTCATG
TTCATGAATTTGTATCAAACTCTTGGACCTATCTTGAGATTTGTAATGTT
TCCTGTTGATTTTGATGCAAATTTGCTCGTCCATCATCATTTTTGAGTGA
TCCTCGGT
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