CX296697

Overview
NameCX296697
Unique NameCX296697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig700 contig Ccv1_Contig700:634..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296697 vs. ExPASy Swiss-Prot
Match: HAC12_ARATH (Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = -2 
Query:   34 RGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSAKTISSLSQQKRKRMEESRGTMG 360
            R P   +  C+ ++ L RH   CK R +GGC+ CK+MW LL+LH+  C++S+ C VP C   K   +  ++  D R R  V +++            R+R  E  GT G
Sbjct: 1611 RSPVCLYPNCRKVKGLFRHGLRCKVRASGGCVLCKKMWYLLQLHARACKESE-CDVPRCGDLKEHLRRLQQQSDSRRRAAVMEMM------------RQRAAEVAGTSG 1706
The following BLAST results are available for this feature:
BLAST of CX296697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HAC12_ARATH4.866e-1133.94Histone acetyltransferase HAC12 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC05801G09SK FerrChloL1 Citrus clementina cDNA clone C05801G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296697 ID=CX296697; Name=CX296697; organism=Citrus clementina; type=EST; length=532bp
CGGCGCGAGGTTTACGCTTCTGATGCTGTAATCGCCCATGGTGCCCCTGG
ATTCTTCCATTCTCTTCCTCTTTTGCTGAGACAATGAAGATATGGTTTTG
GCGGATACCACTTTCTTCACTAGAAGCCTCCACCGGCCATCGTCGCCTTT
TTTCTCTAGTTGTGCTTTCAATTTGAATTGCCTGCAAAGCGGCACCCTAC
AAGAATCAGATTGTTCACACATTGATGAGTGGAGTCTAAGAAGCTGCCAC
ATCCGCTTGCAGCGCAGGCACCCTCCATTGACCCTCTTCTTACAGGTTGC
AAAATGCCTTATCAAGAGCTGCAGGCCCTGACACGTGGCGAATTTACTAC
AGGGACCCCTGTTCTTTGTGGGCCCCACTTCATACGGCCCCACGCTGGTG
CACCCTTCGGTGCATATGTGCTCCAGGCATTCCATCGCTTCGCTCAGCTG
CAAATACAAGCCCTGTTCTTGTCTACGCCTCCTTGTCCTATTTATTCTCG
ATTCTGCTTCGTCCATGAATTGTAGAATCTGG
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