CX296715

Overview
NameCX296715
Unique NameCX296715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig705 contig Ccv1_Contig705:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 104/163 (63.80%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERARRLA++A L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS
Sbjct:    1 MERARRLANKAILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLAS 142          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 103/163 (63.19%), Postives = 115/163 (70.55%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS
Sbjct:    1 MERARRLA---ILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLAS 139          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.631e-40
Identity = 102/163 (62.58%), Postives = 115/163 (70.55%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPK+IR+DSMK+SKFDEGLTESQMI HMQ LAS
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSSALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHMQDLAS 139          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.660e-40
Identity = 102/163 (62.58%), Postives = 114/163 (69.94%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VC   N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCGGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLAS 139          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.613e-39
Identity = 94/162 (58.02%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERAR+LA+RA LKRLV++SKQ   N   S         Y PSRY+SSLS   F   NN++S   Q                Q R ISVEALKPSDTF RRHNSATPE+Q KM+E  G  +LD+LIDATVP+SIR +SMK  KFD GLTESQMIEHMQ LAS
Sbjct:    1 MERARKLANRAILKRLVSQSKQSRSNEIPSSSL------YRPSRYVSSLSPYTFQARNNAKSFNTQ----------------QARSISVEALKPSDTFPRRHNSATPEEQTKMAEFCGFQSLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHMQNLAS 140          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.383e-37
Identity = 93/163 (57.06%), Postives = 109/163 (66.87%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSK-FDEGLTESQMIEHMQKLAS 697
            MERARRLA R  +KRLVNE+K+    HR  +       T TPSRY+SS+S       + S S    S    H          QTR ISV+ALKPSDTF RRHNSATP++QA+M+   G DNL++LID+TVPKSIR+DSMKFS  FDEGLTESQMIEHM  LAS
Sbjct:    1 MERARRLAYRGIVKRLVNETKR----HRNGESSLLPTTTVTPSRYVSSVSSFLHRRRDVSGSAFTTSGRNQH----------QTRSISVDALKPSDTFPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLAS 149          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.806e-37
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTP-------SRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERARRLA+RA LKRL++E+KQ    +R+++       T  P       SRY+SS+S +  +    S+ D   SR +      G G  SQ+R ISVEALKPSDTF RRHNSATP++Q KM+E VG D LDSL+DATVPKSIR+  MKF+KFD GLTE QMIEHM+ LAS
Sbjct:    1 MERARRLANRATLKRLLSEAKQ----NRKTESTSTTTTTPLPFSLSGSSSRYVSSVSNS-ILRGRGSKPDNNVSRRVG--GFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTKMAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKDLAS 162          
BLAST of CX296715 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.358e-37
Identity = 89/162 (54.94%), Postives = 114/162 (70.37%), Query Frame = 2
Query:  212 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLAS 697
            MERARRLA R  +KRLVN++K+    HR ++        + P+RY+SSLS  PF+ +          R+++H     +G   QTR ISV+A+KPSDTF RRHNSATP++Q  M++  G D++DSLIDATVPKSIR+DSMKFSKFD GLTESQMI+HM  LAS
Sbjct:    1 MERARRLAYRGIVKRLVNDTKR----HRNAETPHLVP--HAPARYVSSLS--PFIST---------PRSVNH--TAAFGRHQQTRSISVDAVKPSDTFPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHMVDLAS 143          
The following BLAST results are available for this feature:
BLAST of CX296715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GCSPA_FLAPR1.427e-4263.80Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSPB_FLAPR3.887e-4063.19Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR6.631e-4062.58Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN8.660e-4062.58Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU5.613e-3958.02Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH1.383e-3757.06Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_PEA1.806e-3755.62Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH2.358e-3754.94Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
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Properties
Property NameValue
Genbank descriptionC05802A04SK FerrChloL1 Citrus clementina cDNA clone C05802A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296715 ID=CX296715; Name=CX296715; organism=Citrus clementina; type=EST; length=700bp
GCCGAATTCGGCACGAGGTTATCACCAACCCCCTACCCCCACTGACTCTT
ATGTAACAAAAATATTTACTTTATTGAAAAACTACTCTTTTTATCTTCTC
AACAACCCCATTTGCCTTGCTTTGCCTTGCTTCTTGTGAAGTTATTTCCT
TTTTTGAAGTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATC
TCACTTCATTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTC
AAACGCCTGGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATC
AAAATCATCAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCT
CTTCATTGTCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGAT
TTGTTGCAATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTAT
CGGGTCACAGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATA
CTTTTGCTCGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATG
TCTGAGTTAGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGT
GCCTAAATCTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAG
GGTTAACCGAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATG
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