CX296763

Overview
NameCX296763
Unique NameCX296763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296763_ssr169 microsatellite CX296763_ssr169:169..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig599 contig Ccv1_Contig599:293..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.741e-72
Identity = 141/171 (82.46%), Postives = 147/171 (85.96%), Query Frame = -2
Query:  268 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 768
            IDEHIGCAMS    D   ++ H    + ETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCN KAI         SLQEQ+NKDLTLQEAETIALSILKQVMEEKVTPNNVDIA+VAPTYHLYTPSEVEAVI+RL
Sbjct:   70 IDEHIGCAMSGLIADARTLVEHA---RVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 237          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.907e-70
Identity = 138/171 (80.70%), Postives = 146/171 (85.38%), Query Frame = -2
Query:  268 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 768
            IDEHIGCAMS    D   ++ H    + ETQNHRFSYGEPMTVESTTQA+CDLALRFGEGDEESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAI         SLQEQYNK+LTLQEAETIALSILKQVMEEKVTPNNVDIA+V+P YHLYTP+EVEAVI RL
Sbjct:   70 IDEHIGCAMSGLIADARTLVEHA---RVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVIARL 237          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 7.246e-70
Identity = 136/171 (79.53%), Postives = 146/171 (85.38%), Query Frame = -2
Query:  268 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 768
            ID+HIGCAMS    D   ++ H    + ETQNHRFSYGEPMTVESTTQALCDLALRFGEG+EESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAI         SLQEQ+NKD+TLQEAETIA+SILKQVMEEKVTPNNVDIA+VAP YHLYTP EVEAVI+RL
Sbjct:   70 IDDHIGCAMSGLIADARTLVEHA---RVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVISRL 237          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.753e-69
Identity = 136/171 (79.53%), Postives = 145/171 (84.80%), Query Frame = -2
Query:  268 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 768
            ID+HIGCAMS    D   ++ H    + ETQNHRFSYGEPMTVESTTQALCDLALRFGEG+EESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAI         SLQEQ+NKDL+LQEAETIA+SILKQVMEEKVTPNNVDIA+VAP YHLYTP EVEAVI RL
Sbjct:   70 IDDHIGCAMSGLIADARTLVEHA---RVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVIARL 237          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.969e-39
Identity = 85/175 (48.57%), Postives = 119/175 (68.00%), Query Frame = -2
Query:  271 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGD---EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 768
            ID HIGCA+S    D   ++ H    + +TQNHRF+Y EP  +ESTTQ++CDLALRFGEG+   E  MSRPFGV+LLIAG DE+GP LY+++PSGT+++  AKAI          L ++++KD+TL+EAE + L +L+QVMEEK+   NV +A+V     +H+Y   E+   + R
Sbjct:   70 IDSHIGCAISGLTADARTIIEHA---RVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEMADAVAR 241          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 91/177 (51.41%), Postives = 116/177 (65.54%), Query Frame = -2
Query:  268 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEG---DEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRL 768
            ID H+ CA+S    D   ++ H    + ETQNHRF+Y EPM VES  Q++CDLALRFGE     EE MSRPFGV+LLIAG DE GPSLYY+DPSGTF Q +AKAI         +LQE+Y+K LT+ E + +AL+ LKQVMEE +T  NV++A +      + +Y   E+  VI  L
Sbjct:   67 IDYHLICALSGLVADARTIIDHA---RIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKIYNKEELATVIQTL 240          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.247e-37
Identity = 89/172 (51.74%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  277 IDEHIGCAMSD*LLMLVHC*T----CKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 768
            ID HIGCAMS    ++    T     + ETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AI         SLQE Y+K +TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   70 IDAHIGCAMSG---LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.247e-37
Identity = 89/172 (51.74%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  277 IDEHIGCAMSD*LLMLVHC*T----CKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 768
            ID HIGCAMS    ++    T     + ETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AI         SLQE Y+K +TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   70 IDAHIGCAMSG---LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.247e-37
Identity = 89/172 (51.74%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  277 IDEHIGCAMSD*LLMLVHC*T----CKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 768
            ID HIGCAMS    ++    T     + ETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AI         SLQE Y+K +TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   70 IDAHIGCAMSG---LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.779e-37
Identity = 89/172 (51.74%), Postives = 114/172 (66.28%), Query Frame = -2
Query:  277 IDEHIGCAMSD*LLMLVHC*T----CKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVI 768
            ID HIGCAMS    ++    T     + ETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AI         SLQE Y+K  TL+EA   +L ILKQVMEEK+   N+++A V P   +H++T  E+E VI
Sbjct:   70 IDAHIGCAMSG---LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
The following BLAST results are available for this feature:
BLAST of CX296763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PSA5_SOYBN7.741e-7282.46Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_ORYSJ1.907e-7080.70Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5B_ARATH7.246e-7079.53Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH2.753e-6979.53Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SCHPO2.969e-3948.57Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5_DICDI1.128e-3851.41Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA5_MOUSE1.247e-3751.74Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN1.247e-3751.74Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN1.247e-3751.74Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA5_RAT2.779e-3751.74Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC05802E08SK FerrChloL1 Citrus clementina cDNA clone C05802E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296763 ID=CX296763; Name=CX296763; organism=Citrus clementina; type=EST; length=769bp
ACGAGGCTATCTTCCATTAGGTTCATATCGTTCATACAACTGAGAAGTAC
TTCAGTTCTGCACGGACACAGATTTCGGGGGTATGATAGGCAGCTCAAAC
CCAGCACCAAAACAGAAAGGTTTAAATGGGTGCAATCCCAATCATAAACA
AATATAATTGTTTCCCCTAACAAACAAACAACCAAGTGCACTTGCACTGC
AAAGAACTGAAGAAACACCACTAAAGCCAGGGAAGAATTTTTAAAGATTA
TTTTCTCCAGATACTCATAGGCGATTGATGACAGCCTCCACCTCAGAAGG
GGTATAGAGATGATACGTTGGAGCTACCCTTGCAATATCAACATTGTTTG
GAGTGACCTTTTCTTCCATAACTTGCTTCAAAATTGATAGAGCAATTGTC
TCTGCTTCCTGAAGGGTTAAATCCTTGTTATATTGCTCTTGGAGAGAACT
GTCAGCTCCTTATGAACCTGAACCAATAGCCTTCGCATTGCATTGCCAGA
ATGTGCCAGATGGATCTGTATAGTACAGGCTAGGTCCATTCTCGTCAGAT
CCAGCAATAAGAAGGGATACTCCAAATGGTCGAGACATGGATTCTTCATC
GCCTTCACCAAAGCGTAGCGCCAGGTCACAGAGTGCTTGTGTAGTAGATT
CTACGGTCATTGGCTCACCATATGAGAATCTATGATTCTGAGTTTCACCC
TTGCATGTTCAACAGTGTACGAGCATCAGCAATCAATCACTCATAGCACA
TCCTATATGCTCATCAATT
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