CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 412.92 bits (1060), Expect = 7.786e-115
Identity = 207/227 (91.19%), Postives = 216/227 (95.15%), Query Frame = 2
Query:    2 SIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVFY 682
            SIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG+KE+TG+DR SLRQAVIFICATNRPDELDLEFVR GRIDRRLYIGLPDAKQRVQIF VHSAGK LAED++F +LVFRTVGFSGADIRNLVNE+ IMSVRKG S I QQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVS+EKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKE  +SVFY
Sbjct:  578 SIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFY 804          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 89/229 (38.86%), Postives = 134/229 (58.52%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+  AP  VF+DEIDA+     AG     D R + T   L+ ++DG    +GV         I + ATNRPD LD   +RPGR DR++ +  PD   RV+I +VHS GK LA+DV+FE++  RT GF+GAD++NL+NE+ I++ R+   +I + +I D L++ ++ G          +K    VS EK+RL+A HEAGH ++  L P +D  A   ++P G+   ++ F
Sbjct:  320 AKAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ-TINQLLTEMDGFAGNSGV---------IVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER-IIAG---------PEKKNAVVSEEKRRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 528          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 88/229 (38.43%), Postives = 132/229 (57.64%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+  AP  VF+DEIDA+     AG     D R + T   L+ ++DG    +GV         I + ATNRPD LD   +RPGR DR++ +  PD   RVQI  VHS GK + +DV++E++  RT GF+GAD++NL+NE+ I++ R+   +I + +I D L++ ++ G          +K    VS EKKRL+A HEAGH ++  L P +D  A   ++P G+   ++ F
Sbjct:  338 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQ-TINQLLTEMDGFSGNSGV---------IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALER-IIAG---------PEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 546          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 87/229 (37.99%), Postives = 132/229 (57.64%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+  AP  VF+DEIDA+     AG     D R + T   L+ ++DG    +GV         I + ATNRPD LD   +RPGR DR++ +  PD   RV+I  VHS GK LA+DV+F+++  RT GF+G D++NL+NE+ I++ R+   +I + +I D L++ ++ G          +K    VS EKK+L+A HEAGH ++  L P +D  A   ++P G+   ++ F
Sbjct:  341 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ-TINQLLTEMDGFSGNSGV---------IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDLKEISKDEIADALER-IIAG---------PEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 549          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 88/229 (38.43%), Postives = 132/229 (57.64%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+  AP  VF+DEIDA+     AG     D R + T   L+ ++DG    +GV         I + ATNRPD LD   +RPGR DR++ +  PD   RV+I  VHS GK L +DV+F+++  RT GF+GAD++NL+NE+ I++ R+   +I + +I D L++ ++ G          +K    VS EKKRL+A HEAGH ++  L P +D  A   ++P G+   ++ F
Sbjct:  350 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQ-TINQLLTEMDGFSGNSGV---------IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALER-IIAG---------PEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 558          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+  AP  VF+DEIDA+     AG     D R + T   L+ ++DG    +GV         I + ATNRPD LD   +RPG+ DR++ +  PD   RV+I  VHS GK LA+DV+F+++  RT GF+GAD++NL+NE+ I++ R+   +I + +I D L++ ++ G          +K    VS EKK+L+A HEAGH ++  L P +D  A   ++P G+   ++ F
Sbjct:  318 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ-TINQLLTEMDGFSGNSGV---------IVLAATNRPDVLDSALLRPGKFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER-IIAG---------PEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 526          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 86/229 (37.55%), Postives = 132/229 (57.64%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+  AP  VF+DEIDA+     AG     D R + T   L+ ++DG    +GV         I + ATNRPD LD   +RPGR DR++ +  PD   R++I  VHS GK L +DV+FE++  RT G++GAD++NL+NE+ I++ R+   +I + +I D L++ ++ G          +K    VS EKK+L+A HEAGH ++  L P +D  A   ++P G+   ++ F
Sbjct:  341 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQ-TINQLLTEMDGFSGNSGV---------IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARRELKEISKDEISDALER-IIAG---------PEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 549          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 80/229 (34.93%), Postives = 130/229 (56.77%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+ NAP  VF+DEIDA+     AG     D R + T   L+ ++DG +  TG+         I + ATNRPD LD   +RPGR DR++ +  PD   R +I +VH+ GK L++DV+ +++  RT GF+GAD+ NL+NE+ I++ R+  ++I   ++ D +D+ L             +K  + +S ++K L+A HEAGH ++  L P +D      ++P G+   ++ F
Sbjct:  249 AKANAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ-TLNQLLTEMDGFEGNTGI---------IIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLTEISMDEVNDAIDRVL----------AGPEKKNRVMSEKRKTLVAYHEAGHALVGALMPDYDPVQKISIIPRGRAGGLTWF 457          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 79/228 (34.65%), Postives = 121/228 (53.07%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+ NAP  VFVDEIDA+  +        +  R  T   L+ ++DG +  TG+         I I ATNR D LD   +RPGR DR++ + +PD + R +I  VH + K+   DV+ E +  RT GFSGAD+ NL+NE+ I++ R+G + I  ++I D +D+ +    G ++T+            + K L+A HE GH +   L P  D      L+P G+   ++ F
Sbjct:  302 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI---------IVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDG-----------KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPRGQARGLTWF 509          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 80/228 (35.09%), Postives = 119/228 (52.19%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKENCISVF 679
            A+ NAP  VFVDEIDA+  +        +  R  T   L+ ++DG +  TGV         I + ATNR D LD   +RPGR DR++ + +PD K R  I  VHS  K+    V+ E +  RT GFSGAD+ NL+NE+ I++ R+G + I  ++I D +D+ +    G ++T+            + K L+A HE GH +   L P  D      L+P G+   ++ F
Sbjct:  308 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGV---------IVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDG-----------KSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWF 515          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
FTSHC_ARATH7.786e-11591.19Cell division protease ftsH homolog 12, chloroplas... [more]
FTSH1_ORYSJ3.235e-3638.86Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH5_ARATH1.606e-3538.43Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_MEDSA2.097e-3537.99Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH2.097e-3538.43Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_CAPAN2.739e-3537.99Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_TOBAC4.672e-3537.55Cell division protease ftsH homolog, chloroplastic... [more]
FTSH4_SYNY37.458e-3334.93Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH2_ORYSJ5.345e-3134.65Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH6.981e-3135.09Cell division protease ftsH homolog 8, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
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