CX296766

Overview
NameCX296766
Unique NameCX296766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296766 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   70 LRGSKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCR 225
            +R SK+  K C VCL EF+EE+ V  +PC H +HS+C+LPWL+    CP CR
Sbjct:   79 IRSSKAELK-CPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCR 129
[Close]
BLAST of CX296766 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   70 LRGSKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCR 225
            +RGS++  K C VCL EF+EE+    +PC H +HS+C+LPWL+    CP CR
Sbjct:   67 IRGSQAELK-CPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCR 117
The following BLAST results are available for this feature:
BLAST of CX296766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RN181_RAT5.741e-1151.92E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_BOVIN9.792e-1150.00E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
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Properties
Property NameValue
Genbank descriptionC05802E11SK FerrChloL1 Citrus clementina cDNA clone C05802E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296766 ID=CX296766; Name=CX296766; organism=Citrus clementina; type=EST; length=413bp
TGCCGAATTCGGCACGAGGCTCGCTTGGGCTCAAAATTGTTATGGGGGAG
TCATCTGCGGCACTTGAAGCTCAGGGGGAGTAAATCAAATACGAAAATTT
GCTCTGTTTGCTTGGAAGAATTTCAGGAGGAGCAACCGGTCACGAGACTC
CCATGCTCTCACAAGTACCATTCAGATTGTGTTCTTCCTTGGCTTGCAGC
CCATCCCCAATGCCCCTATTGCCGGAGACCTGCCCTTGTATGGTGATGAT
AGTCAATTACTAAATAAATATGTATCTCTTGTAAGAGAAAAATGAAAAAC
AAGAAGACCAAGCTATAGTTATTGACTTATTGTGCATCCATTTATTATTT
ACGGAATCAAATACGCGTGGCAAGACAAAAAGCTTTGGTAGTGTAAAAAA
AAAAAAAAAAAAA
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