CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10074 contig Ccv1_Contig10074:14..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_MAGSM (50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 62/112 (55.36%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+L+R T HR +M++ M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A + + GD +V+HKLFT+LA R KDR GGYTR+L++R R GD APM++IE V+R
Sbjct:    8 RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQALSILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVER 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOSL (50S ribosomal protein L17 OS=Geobacter sulfurreducens GN=rplQ PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAVPQPPPRAAMDPWTRSRLTKNFAPPKQEKSSDAEI 531
            R+L R T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE V+   E +  K     P    A  P          A P++ +   +E+
Sbjct:    8 RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAASYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKSKPTAPAQAVATKPAVEETREAAAAQPQEPEVEISEV 163          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOSM (50S ribosomal protein L17 OS=Geobacter sp. (strain M21) GN=rplQ PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAV-PQPPPRAA 453
            R+L R T HR++M R MV+  ++HE+I TT AKAKE+R +A+ M+ LGK G L A R+AAA++R   V+ KLFTE+A RY +R GGYTR+++  IR GD AP++ +E V+   E++  K A  P   P+AA
Sbjct:    8 RRLGRTTSHRIAMFRNMVTSFLQHEKITTTDAKAKELRSIAEKMITLGKRGDLHATRQAAAYIRDKKVVTKLFTEIAPRYTERPGGYTRIIKLGIRPGDNAPVSVLELVEA--EMKPKKAAAKPAKAPKAA 136          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOLS (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplQ PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+L R T HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AAA++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDAA ++ IE V+ A
Sbjct:    8 RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAAAYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIELVEEA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SYNFM (50S ribosomal protein L17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplQ PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAVPQPPPRAAMDPWTRSRLTKNFAPPKQEKSSD 522
            RKLNR T HR++M R MV+ L++HERI TT+ KAKE+RR AD M+ LGK G L A R+  A VR  + + K+F EL  RY+ R GGYTR++++  R GDA+PM  IE +  A +  + + A    P +A            +  P  +EK+ D
Sbjct:    8 RKLNRATSHRLAMFRNMVTSLLQHERIFTTLPKAKELRRWADWMISLGKRGDLHARRQVMACVREKETVQKIFAELGPRYQSRPGGYTRIVKAGYRRGDASPMCLIELITEAKQPPRKEKAKKPAPVQAE---------EASATPASEEKAQD 151          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DESHY (50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain Y51) GN=rplQ PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV  +A+ M+ LGK+G L A R A  ++  +DV+ KLFTE+A +Y DR GGYTR+++   R GDAA M  IE V
Sbjct:    3 YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNALTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIELV 112          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DESHD (50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplQ PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV  +A+ M+ LGK+G L A R A  ++  +DV+ KLFTE+A +Y DR GGYTR+++   R GDAA M  IE V
Sbjct:    3 YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNALTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIELV 112          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOCS (50S ribosomal protein L17 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplQ PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELR 411
            RK NR T HR++M   M + L+KHE+I+TT+ KAK++R + + ++ LGK+G L   R A A +R  D++ KLFT LA RYK R GGYTR+L++  R GDAAPM  IE VDR  E +
Sbjct:    8 RKFNRTTSHRLAMFSNMANALIKHEQIKTTLPKAKDLRPIVERLITLGKKGGLANKRLAYAELRDHDMVEKLFTTLAERYKGRPGGYTRVLKAGFRYGDAAPMGVIELVDRDPEAK 123          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOSF (50S ribosomal protein L17 OS=Geobacter sp. (strain FRC-32) GN=rplQ PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA-------NELRQSKPAVPQPPPRAAMDPWTRSRLTKNFAPPKQE 510
            ++L R T HR++M R MV+  + HERI TT AKAK +R +A+ M+ LGK+G L A R+AA+F+R   V+ KLFT +A RY +RAGGYTR+++  IR GD AP++ IE V+          ++   KPA       A+    +    T N A P +E
Sbjct:    8 KRLGRTTSHRIAMYRNMVTSFLNHERITTTDAKAKGLRSIAEKMITLGKKGDLNAMRQAASFIRDKKVVTKLFTTIAPRYAERAGGYTRIIKLGIRPGDNAPLSVIELVEETIQAPKAKKKIAAKKPATKVAAKAASATAESAPVATANDAAPAEE 163          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOMG (50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 60/123 (48.78%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA--NELRQSKPA 426
            R+L R T HR++M R MV+  ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE V+     + +++KPA
Sbjct:    8 RRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAASYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIELVEEQVNKKEKKAKPA 130          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_MAGSM1.780e-2955.3650S ribosomal protein L17 OS=Magnetococcus sp. (st... [more]
RL17_GEOSL1.507e-2842.3150S ribosomal protein L17 OS=Geobacter sulfurreduc... [more]
RL17_GEOSM5.725e-2848.8550S ribosomal protein L17 OS=Geobacter sp. (strain... [more]
RL17_GEOLS7.477e-2854.4650S ribosomal protein L17 OS=Geobacter lovleyi (st... [more]
RL17_SYNFM2.176e-2743.1450S ribosomal protein L17 OS=Syntrophobacter fumar... [more]
RL17_DESHY3.711e-2754.5550S ribosomal protein L17 OS=Desulfitobacterium ha... [more]
RL17_DESHD3.711e-2754.5550S ribosomal protein L17 OS=Desulfitobacterium ha... [more]
RL17_RHOCS4.847e-2750.8650S ribosomal protein L17 OS=Rhodospirillum centen... [more]
RL17_GEOSF6.330e-2742.3150S ribosomal protein L17 OS=Geobacter sp. (strain... [more]
RL17_GEOMG8.267e-2748.7850S ribosomal protein L17 OS=Geobacter metalliredu... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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