CX296829

Overview
NameCX296829
Unique NameCX296829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13705 contig Ccv1_Contig13705:141..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.682e-90
Identity = 165/186 (88.71%), Postives = 173/186 (93.01%), Query Frame = 1
Query:  169 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 726
            EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM+TT+LGFKISMPIMIAPTAMQKMAHPEGEY         GTIMTLSSW+TSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLKNF+G+D
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGID 187          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.282e-89
Identity = 163/186 (87.63%), Postives = 174/186 (93.55%), Query Frame = 1
Query:  169 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 726
            EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM+TTVLGFKISMPIM+APTAMQKMAHP+GEY         GTIMTLSSW+TSSVEEVASTGPGIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLKNF+GLD
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLD 187          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.310e-86
Identity = 159/186 (85.48%), Postives = 171/186 (91.94%), Query Frame = 1
Query:  169 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 726
            EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM+TTVLGFKISMPIM+APTA QKMAHP+GEY         GTIMTLSSW+TSSVEEVASTGPGIRFFQLYVYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLKNF+GLD
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLD 187          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.380e-48
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  181 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 717
            + +YE  AK  LPK ++DYY SGA D+ TL +N  AFSR    PR+L +V++ D+ST+VLG ++SMPI +  TAMQ+MAH +GE          GT M LSSW+TSS+EEVA  GP  +R+ QLY+YKDR V  +LVR+AE+ G+KAI +TVDTP LG R  D++NRF LPP L +KNF+
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 187          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 97/183 (53.01%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  181 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 726
            + +YE   +  L K V+DYY SGA DQ TL +N  AFSR    PR+L +V+ ID+ST+VLG ++SMPI +  TAMQ MAH +GE          GT M LSSW+TSS+EEVA  GP  +R+ QLY+YKDR +  Q+V+RAE+ G+KAI +TVDTP LG R  D++NRF LPP L +KNF+  D
Sbjct:    8 ISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETND 190          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.590e-46
Identity = 102/198 (51.52%), Postives = 128/198 (64.65%), Query Frame = 1
Query:  133 NLSRKQSTDKMGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAS-TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 723
            N    + T+++    +V E    AK  LPKM +DYYASG+ DQ TL EN NAFSRI   PR L+DVSK++  T + G  IS PI+IAP AMQ+MA   GE           TIMTLSS ST+SVE+++S T     +FQLYV+KDR V  +LV+RAE  G+ A+ LTVDTP LG+R AD KN F LP  L+LK F+ L
Sbjct:   18 NQFSNKKTNRLDSFVSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKL 215          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 74/184 (40.22%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  136 LSRKQSTDKMGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTG-PG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 681
            L R +    + ++ N+ ++E IA++ LP     YY S A+D+ TL+EN NA+ RI F P+ILIDV  +D+ST   G K S P  I+ TA+ K+ HPEGE            +  +S+ ++ S +E+A    PG  +++QLYV  DR++  + VR AE  G K + +TVD P LGRRE D+K +F
Sbjct:  175 LERIERKPPLSQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLYVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMKF 358          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  187 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 711
            ++   A+E L K  +D+   GA+D  T  EN  AF +I  RPR L DVSK+DM TT+ G +IS PI IAPT   ++A P+GE                S++++ S+E++ +  P G+R+FQLYV+ +R +  Q++++ E  GFKA+ +TVD P++G R  DI N+  L   L LK+
Sbjct:    8 DFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQVDLMKKLLLKD 183          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 71/180 (39.44%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  163 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 684
            +  I N+ ++E +A + L K  + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D+ST +LG  + +P  ++ TA+ K+ +P EGE           T     I TL+S S   + E A +   I+++QLYV  DR +   LV+  E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct:  199 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 378          
BLAST of CX296829 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.059e-30
Identity = 71/180 (39.44%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  187 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 723
            +++A A+++L K  +D+    A+D  T  EN  AF RI  RPR L D+SK+D  TT+ G +IS PI I+PTA   +A P+GE               +SS+++ S+E++ +  P G R+FQLY+  D +   Q+V+RAE  GFKA+ +T+DTP LG R  D +N+  L   + LK+ + L
Sbjct:    8 DFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRAL 187          
The following BLAST results are available for this feature:
BLAST of CX296829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL5.682e-9088.71Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH6.282e-8987.63Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH1.310e-8685.48Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN5.380e-4853.89Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE5.949e-4753.01Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX_DICDI8.590e-4651.52Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
CYB2_HANAN2.866e-3340.22Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX2_BOVIN1.573e-3139.77Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
CYB2_YEAST7.805e-3139.44Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
HAOX2_RAT5.059e-3039.44Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]

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Properties
Property NameValue
Genbank descriptionC05803C08SK FerrChloL1 Citrus clementina cDNA clone C05803C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296829 ID=CX296829; Name=CX296829; organism=Citrus clementina; type=EST; length=727bp
CCGAATTCGGCACGAGGTTTGCTTTCTATTTCTTAAATCTCCCTCTATAA
CTCAGTCTTTGTTCATCATCGTCTTCTCTCTACTGGTTTCTCTGAATGCA
CTTTGCTGCACTGTCTTTGTAAACCTTAGATTAATTTAAGTAGAAAACAG
TCAACTGACAAGATGGGAGAGATCACAAATGTGATGGAGTATGAGGCCAT
TGCCAAGGAAAAGTTGCCAAAGATGGTGTTTGATTACTATGCTTCAGGTG
CAGAGGACCAGTGGACTTTGCAAGAGAACAGGAATGCTTTCTCAAGAATC
CTGTTTCGACCTCGCATTCTGATTGATGTAAGCAAAATAGACATGAGTAC
CACTGTCTTGGGCTTCAAGATATCGATGCCAATCATGATTGCCCCAACAG
CCATGCAGAAGATGGCTCATCCTGAAGGGGAGTATGCTACAGCTAGAGCT
GCATCGGCTGCTGGAACGATTATGACATTGTCTTCGTGGTCTACTTCTAG
CGTTGAAGAGGTTGCTTCAACAGGACCTGGCATCCGCTTTTTCCAGCTCT
ATGTGTACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGGGCTGAA
AGAGCCGGATTCAAGGCCATTGCTCTAACAGTTGATACCCCGAGGCTGGG
TCGCAGAGAAGCTGACATCAAGAACAGATTCACTCTACCACCATTTTTGA
CATTAAAGAATTTTCAGGGTTTGGACC
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