CX296860

Overview
NameCX296860
Unique NameCX296860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6107 contig Ccv1_Contig6107:1148..1850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296860 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 105/156 (67.31%), Postives = 122/156 (78.21%), Query Frame = -1
Query:  236 RKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSTSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPT 703
            RKSDYV   IPK  +  L+K+M+ELGKIGLVFNPYGGKMAE+  +   FPHR   LFKIQYS++W +   EIE+  L+QA  LYSFMT FVS +PRS+Y NYRDVDIG+N HG +SY EG+VYG KYF  NFDRLVK+KT VDP NFFRNEQSIPT
Sbjct:  381 RKSDYVATAIPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQSIPT 535          
BLAST of CX296860 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 51/159 (32.08%), Postives = 90/159 (56.60%), Query Frame = -1
Query:  239 KSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSTSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIP 700
            K D  ++P+P  +   L +++ +     +  N +GG+M++I +  T FPHR+G    ++Y ++W+    + + + L     +Y FM PFVS +PR  Y+N+ D+D+G    G  +     +     +GE YF  N++RL++ KT++DP N F + QSIP
Sbjct:  359 KVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517          
BLAST of CX296860 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = -1
Query:  239 KSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATS----LYSFMTPFVSTSPRSAYLNYRDVDIG-INHHGEDSYAEG----KVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIP 700
            K D+ +  +P        + + E     +  N +GGKM+EI    T FPHR G     +Y I+W+      EE ++ + +      Y ++ PFVS  PR  Y+N+ D+DIG I+   + S        + +GE+YF+ N++RLVK KT++DP N F + QSIP
Sbjct:  363 KVDFTKVSVPLNVFRHALEMLSEQPGGFIALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWNQD----EESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYERLVKAKTLIDPNNVFNHPQSIP 521          
The following BLAST results are available for this feature:
BLAST of CX296860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETOL_ARATH8.692e-5667.31Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA7.427e-2332.08Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO5.322e-2134.36Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
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Properties
Property NameValue
Genbank descriptionC05803F04SK FerrChloL1 Citrus clementina cDNA clone C05803F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296860 ID=CX296860; Name=CX296860; organism=Citrus clementina; type=EST; length=703bp
ATAATCTGATCTGTATTTCTGCTATTTGCAATAGACAACACCAGTAATGT
CATGTGACAACAAAGTAAAACAAGAACAGAAACAGATAGACAATTGAAAG
GAATTGAATTATTCGCTCGTAATAGCAATACAAAAGCTTACTCCTATAAT
CCTATTTGCTGTATATAAAGCCTATTGCAAAAAGATCACCAACACAAAAG
TGCTTTAATCAATCGTTTTATGCCTTACTTGGTTGAGTGGGGATGCTCTG
CTCATTCCTGAAGAAATTTTCTGGATCAACCATGGTCTTCACTTTCACCA
ACCTATCAAAATTACCATTAAAATACTTCTCCCCATACACTTTCCCCTCA
GCATAGCTATCTTCACCATGATGATTGATACCGATATCCACATCCCTATA
ATTCAAATAAGCACTTCGTGGACTCGTTGACACAAATGGAGTCATAAAAC
TGTAAAGGCTTGTCGCCTGAGATAGTCTGTCCTCCTCAATCTCAGTTCCA
GGATCACTCCAACTTATTGAATACTGAATCTTGAACAAGTTTCCTGCTCT
GTGTGGAAATGCAGTCTCTGATGCTGGAATTTCAGCCATTTTTCCTCCAT
AAGGATTGAAGACCAACCCAATTTTCCCCAATTCCATCATTTGTTTCCAC
AGCAAATTCAGGGAATATTTTGGAATCGGTTTCTGAACATAATCAGATTT
CCT
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