CX296869

Overview
NameCX296869
Unique NameCX296869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.168e-79
Identity = 146/242 (60.33%), Postives = 179/242 (73.97%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKLESSNVYAPSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            H+S PEPIVHRDLKPGNILL+RNYVSKI DVGLAKL++D  PDN+T YR ++LAGTLHY+DPEYHRTGTIRPKSDLYAFG+IILQLLT+  P+G++  VE+A+K G+  ++LDKS+TDWPLAETEELA I LKC+  RCRDRPDL +EV+PVL++L + A++ VK E SN+ APSH+FCPIL+                                    E+ME+P IAADGFTYE +AI AW
Sbjct:  553 HSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGIVPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVETANSKVKKEGSNLRAPSHYFCPILR------------------------------------EIMEEPEIAADGFTYERKAILAW 758          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.951e-52
Identity = 108/249 (43.37%), Postives = 150/249 (60.24%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKN--GSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKLESSNVY-----APSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            H + P PIVHRDLKP NILLDRN VSKIGDVGL+K+++       T + ET   GT  Y+DPEY RTG + P+SD+YAFG+I+LQL+T+    G+   +E A+++  G F +ILDK+  DWP+ E +E+  I L+C+ +R RDRPDL  E++PVL +LK+VA     + + N+      AP+HF+CPI +                                    +VME+P +A+DG+TYE RAIK W
Sbjct:  546 HTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHSIEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASIARNMFADNLIDHHHNAPTHFYCPITK------------------------------------DVMENPCVASDGYTYEKRAIKEW 758          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.585e-52
Identity = 111/248 (44.76%), Postives = 151/248 (60.89%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLI--SDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKNGS---FADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVAD-ACVKLESSNVYAPSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            H S P PI+HRDLKP NILL+ N+VSK+GDVGL+ +I  +D +    T Y++T   GTL Y+DPEY RTG I PKSD+YAFG+IILQLLT      +   VE+A++N +      ILD+   +WP+ ET +LA +AL+C+ LR +DRPDL+ +++PVL  LK VAD A   L ++    PSHFFCP+L+                                    +VM++P IAADG+TY+ RAI+ W
Sbjct:  571 HKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVETAMENNNDDELIQILDEKAGNWPIEETRQLAALALQCTELRSKDRPDLEDQILPVLESLKKVADKARNSLSAAPSQPPSHFFCPLLK------------------------------------DVMKEPCIAADGYTYDRRAIEEW 782          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.675e-47
Identity = 103/244 (42.21%), Postives = 140/244 (57.38%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAI-KNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKLESSNVYA-PSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            H S P PI+HRDLKPGNILLD N+VSK+GDVGL+ +++     + T +++T   GTL Y+DPEY RTG I PKSD+Y+ GV+ILQL+T+     +   VE AI  +  F  ILDK    WP+++T ELA + L C+ +R RDRPDL  +++P L +L+ VAD    L S      PSHF CP+L+                                     VM +P +AADG+TY+  AI+ W
Sbjct:  601 HKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMAILDKKAGSWPISDTRELAALGLCCTEMRRRDRPDLKDQIIPALERLRKVADKAQNLLSRTPSGPPSHFICPLLK------------------------------------GVMNEPCVAADGYTYDREAIEEW 808          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.188e-47
Identity = 104/245 (42.45%), Postives = 142/245 (57.96%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLIS-DAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAI-KNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVAD-ACVKLESSNVYAPSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            H S P+PI+HRDLKP NILLD N+VSK+GDVGL+ ++  D +    T Y++T   GTL Y+DPEY RTG I  KSD+Y+FG+I+LQLLT+     +   VESA+  N  F  ILD+   +WP+ ET ELA +AL C+ LR +DRPDL  +++P L  LK VA+ A       +   P+HF CP+L+                                    +VM +P +AADG+TY+  AI+ W
Sbjct:  591 HKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSFGMILLQLLTAKPAIALTHFVESAMDSNDEFLKILDQKAGNWPIEETRELAALALCCTELRGKDRPDLKDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLK------------------------------------DVMNEPCVAADGYTYDRHAIEEW 799          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.604e-36
Identity = 89/245 (36.33%), Postives = 127/245 (51.84%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKL---ESSNVYAPSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            H++    +VH DLKP NILLD N VSK+ D G   L+      N ++   T + GT+ Y+DPE   +G + PKSD+Y+FG+I+L+LLT      +  +V+ A+ NG+  D+LD    DWP  + E+LA +AL+C      +RPDL TEV  VL  ++  +          + +  AP +F CPI Q                                    EVM+DP++AADGFTYE  AI+AW
Sbjct:  592 HSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLLHP----NGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQ------------------------------------EVMQDPHVAADGFTYEAEAIRAW 796          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 83/243 (34.16%), Postives = 119/243 (48.97%), Query Frame = 3
Query:   51 IVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKLESSNVYA--------PSHFFCPILQVKSHSQLQKRDLQVTFSILACISYRFFYLLHLG*I*EVMEDPYIAADGFTYEHRAIKAW 755
            I+H +LKP  ILLD N V+KI D G+++LI     D    +           +DP Y  +  +  +SD+YAFG+I+LQLLT    +G+L  V+ A++N + + +LD S  DWP+A  ++LA +A++C      +RPDL      VLR +  +    V    ++ YA        PSH+ CPI Q                                    EVM+DP IAADGFTYE  AI+ W
Sbjct:  577 IIHGNLKPSKILLDSNLVTKINDYGISQLIPIDGLDKSDPH-----------VDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAV----VLRFIDRMKAPEVPSSETSSYANQNVPRRPPSHYLCPIFQ------------------------------------EVMKDPLIAADGFTYEAEAIREW 768          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: WAK2_ARATH (Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS----CL-----PNGVLLKVESAIKNGSFADILDKSI-TDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLK 500
            H+S   PI+HRD+K  NILLD+N  +K+ D G ++LI         E   TI+ GTL Y+DPEY+ TG +  KSD+Y+FGV++++LL+     C      P  ++    SA KN  F +I+D  +  +    E +E A IA +C+ L   +RP +  EV   L  L+
Sbjct:  518 HSSASIPIIHRDIKTANILLDKNLTAKVADFGASRLIPMD-----KEQLTTIVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPHCPKNLVSCFASATKNNRFHEIIDGQVMNEDNQREIQEAARIAAECTRLMGEERPRM-KEVAAELEALR 678          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 54/162 (33.33%), Postives = 90/162 (55.56%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNIT-EYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLP----NGVLLKVESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLK 500
            H     PI HRD+K  NILLD  + +K+ D GL++L      + I+ ++  T++ GT  Y+DPEY  T  +  KSD+Y+ GV++L+L T   P      ++ ++  A ++GS    +DK ++  P    E+ A +AL+C    CR+  D    +  V+R+L+
Sbjct:  738 HTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINIAYESGSILSTVDKRMSSVPDECLEKFATLALRC----CREETDARPSMAEVVRELE 895          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: WAK3_ARATH (Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 65/186 (34.95%), Postives = 96/186 (51.61%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS----CLPNGVLLK------VESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKLESSNVYAPSH 557
            H+S   PI+HRD+K  NILLD N  +K+ D G +KLI         E   T++ GTL Y+DPEY+ TG +  KSD+Y+FGV++++LL+     C       K      V +  +N     I D+ + +  L E +E A IA +C+ L   +RP           ++K+VA    KLE+  V    H
Sbjct:  529 HSSASIPIIHRDIKTANILLDENLTAKVADFGASKLIPMD-----KEQLTTMVQGTLGYLDPEYYTTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQASKHLVSYFVSATEENRLHEIIDDQVLNEDNLKEIQEAARIAAECTRLMGEERP-----------RMKEVA---AKLEALRVEKTKH 695          
The following BLAST results are available for this feature:
BLAST of CX296869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
PUB34_ARATH2.168e-7960.33U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB51_ARATH2.951e-5243.37U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB53_ARATH8.585e-5244.76Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB52_ARATH1.675e-4742.21U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB35_ARATH2.188e-4742.45U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB33_ARATH6.604e-3636.33U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB32_ARATH1.129e-2734.16U-box domain-containing protein 32 OS=Arabidopsis ... [more]
WAK2_ARATH6.001e-2137.72Wall-associated receptor kinase 2 OS=Arabidopsis t... [more]
Y1684_ARATH1.478e-1933.33Probable LRR receptor-like serine/threonine-protei... [more]
WAK3_ARATH5.617e-1934.95Wall-associated receptor kinase 3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC05803G02SK FerrChloL1 Citrus clementina cDNA clone C05803G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296869 ID=CX296869; Name=CX296869; organism=Citrus clementina; type=EST; length=755bp
CGAGGCCTCCTGCCGAATTCGGCACGAGGCACAACTCATAGCCAGAGCCT
ATTGTGCATCGAGACTTGAAACCGGGAAACATCTTGTTAGACAGAAATTA
TGTGAGCAAAATTGGGGATGTTGGGCTGGCTAAACTCATTTCAGATGCCA
TACCTGACAACATCACAGAGTACAGAGAGACCATTCTTGCTGGTACTCTT
CATTACATGGACCCAGAATATCACAGAACCGGCACTATTCGTCCCAAATC
TGATCTATATGCATTTGGAGTTATTATACTCCAGTTATTGACATCTTGCC
TTCCGAATGGAGTTCTACTGAAAGTTGAAAGTGCCATTAAGAATGGTTCC
TTTGCTGACATTTTAGACAAGTCAATAACAGATTGGCCGCTTGCTGAAAC
AGAGGAATTAGCTTGCATTGCATTAAAGTGTTCAAATCTTAGATGCAGAG
ATAGACCTGATCTTGATACCGAAGTCATGCCGGTTCTCAGGAAACTCAAG
GATGTTGCAGATGCTTGTGTAAAGTTGGAAAGCAGCAATGTTTATGCACC
AAGCCACTTCTTCTGTCCAATCCTTCAGGTGAAAAGTCACAGTCAATTAC
AGAAACGTGATTTACAAGTTACATTTTCCATATTAGCTTGCATCTCATAT
AGATTTTTCTATTTGCTTCATCTTGGATAAATATAGGAAGTCATGGAAGA
TCCATACATTGCTGCTGATGGATTTACTTATGAGCATAGAGCAATCAAGG
CATGG
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