CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 5.967e-63
Identity = 115/157 (73.25%), Postives = 129/157 (82.17%), Query Frame = -3
Query:  226 IFLAPQ--APAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFES 690
            IFLAP    P  S+GKPPL+  PY+KRC +H DHS+  SGK SGS  GN KCHC K RKNR+K+T+RVPA+S+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA DD TMLIVTYEGEHRH Q+ MQE+  P+  GLVF S
Sbjct:  167 IFLAPAPAVPVTSSGKPPLSGLPYRKRCFEH-DHSEGFSGKISGS--GNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQSTMQEHVTPSVSGLVFGS 320          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.868e-62
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = -3
Query:  226 IFLA--PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 690
            IFLA  P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC K RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct:  170 IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 324          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 82/135 (60.74%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  283 FLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 687
            F  P   + S GKPPL++   K+RC                ++S +++CHCSK+RK+RVK+ IRVPA+SSK+ADIP DE+SWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVERA DD  MLIVTYEG+H H+
Sbjct:  221 FTNPSQLSGSRGKPPLSSASLKRRC----------------NSSPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNHA 339          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.689e-41
Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = -3
Query:  259 DH-KDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 609
            DH   HS   S   S      +KCHCSK+RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  ++ +MLIVTYEGEH HS+    ++A
Sbjct:  211 DHISQHSRRTSCSGSLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSSQSA 328          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.207e-41
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = -3
Query:  268 HKDHSDDLSGKFSGSTS--GNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 606
            H      L G   GS     +++CHC+K+RK+RV+++IRVPAIS+K+ADIPPD+YSWRKYGQKPIKGSPYPRGYYKCS+MRGCPARKHVER  +DP MLIVTYE EH H +   Q
Sbjct:  262 HSKRKCPLKGDEHGSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKLPSQ 376          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.764e-41
Identity = 74/97 (76.29%), Postives = 88/97 (90.72%), Query Frame = -3
Query:  259 NKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 549
            +KCHCSK+RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  D+ +MLIVTYEGEH HS+    ++A
Sbjct:  232 SKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHSRILSSQSA 328          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.916e-41
Identity = 78/127 (61.42%), Postives = 101/127 (79.53%), Query Frame = -3
Query:  223 KDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST 603
            K +S++L      S S + +CHCSK+RK + ++ IRVPAIS+K++D+PPD+YSWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVERA DD +MLIVTYEG+H HS +A  + A  A   L+ ES+
Sbjct:  192 KCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLSA-ADLAGAAVADLILESS 317          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.186e-40
Identity = 72/119 (60.50%), Postives = 95/119 (79.83%), Query Frame = -3
Query:  268 KKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 624
            ++RC   +D +        G  +  ++CHCSK+RK R++++I+VPAIS+K+ADIP DE+SWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  DDP+MLIVTYEG+H H++   Q
Sbjct:  285 RRRCAGREDGT--------GRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQ 395          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = -3
Query:  286 KRRKNRVKKTIRVPA---ISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 531
            KRRK++ KK + +PA   ++S+ +   +P D ++WRKYGQKPIKGSPYPRGYY+CS+ +GC ARK VER+  DP ML++TY  EH H
Sbjct:  186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 272          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = -3
Query:  286 KRRKNRVKKTIRVPA---ISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 531
            KRRK++ KK + +PA   ++S+ +   +P D ++WRKYGQKPIKGSP+PRGYY+CS+ +GC ARK VER+  DP ML++TY  EH H
Sbjct:  188 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 274          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK17_ARATH5.967e-6373.25Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH3.868e-6273.42Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRKY7_ARATH2.357e-4360.74Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK74_ARATH1.689e-4166.95Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK21_ARATH2.207e-4166.09Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK39_ARATH3.764e-4176.29Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRK15_ARATH4.916e-4161.42Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRKY1_MAIZE3.186e-4060.50Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK35_ARATH1.589e-2356.32Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK14_ARATH4.622e-2355.17Probable WRKY transcription factor 14 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
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