CX296879
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296879 vs. ExPASy Swiss-Prot
Match: Y3761_ARATH (Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 7.188e-85 Identity = 148/195 (75.90%), Postives = 173/195 (88.72%), Query Frame = 3 Query: 57 RVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSF 641 R GMLPLLAL A EY+RLPWKPPVTA+LLA NTL+YLRPAF+D ++P I EVWFNPHLI K+KDLKR FLS FYH +E HL YNMMSLLWKGI+LETSMGS+EFA+MV L+GMSQG+TLLLAKSL+L FDY+RAYY+EYAVGFSGVLFAMKVVLNS++EDY++V+G+LVP +YAAWAELI++QMFVP SF Sbjct: 9 RSGGGMLPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGILVPTKYAAWAELILVQMFVPNASF 203
BLAST of CX296879 vs. ExPASy Swiss-Prot
Match: RHBD1_HUMAN (Rhomboid domain-containing protein 1 OS=Homo sapiens GN=RHBDD1 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26 Identity = 69/172 (40.12%), Postives = 96/172 (55.81%), Query Frame = 3 Query: 129 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSF 641 PPVT A LA N +L P ++ + + KD +R LSP +HA + HL++NM S+LWKGI LE +GS FA ++ A ++ + LLL ++ F D E + AVGFSGVLFA+KV+ N + N+ G VP R+A W EL+ I +F PG SF Sbjct: 28 PPVTLATLALNIWFFLNPQ------KPLYSSCLSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMD-EPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSF 192
BLAST of CX296879 vs. ExPASy Swiss-Prot
Match: RHBD1_MOUSE (Rhomboid domain-containing protein 1 OS=Mus musculus GN=Rhbdd1 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25 Identity = 68/172 (39.53%), Postives = 93/172 (54.07%), Query Frame = 3 Query: 129 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSF 641 PPVT A LA N +L P P H + + KD +R LSP +H + HL++NM+S+LWKG++LE +GS F A V+A + G+ LL + V + + AVGFSGVLFA+KV+ N + N+ G VP R+A WAEL+ I PG SF Sbjct: 28 PPVTLATLAVNVWFFLNP-----WKPLYHSC-ISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWF-AYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELVAIHFCTPGTSF 192
BLAST of CX296879 vs. ExPASy Swiss-Prot
Match: RHBD1_PONAB (Rhomboid domain-containing protein 1 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24 Identity = 67/172 (38.95%), Postives = 92/172 (53.49%), Query Frame = 3 Query: 129 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSF 641 PPVT A LA N +L P ++ + + +D +R LSP +HA + HL++N S+LWKGI LE +GS F A V+ + G+ LL + V F E + AVGFSGVLFA+KV+ N + N+ G VP R+A W EL+ I +F PG SF Sbjct: 28 PPVTLATLALNIWFFLNPQ------KPLYSSCLSVEKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWF-AYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSF 192
BLAST of CX296879 vs. ExPASy Swiss-Prot
Match: RHBD1_RAT (Rhomboid domain-containing protein 1 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23 Identity = 65/172 (37.79%), Postives = 90/172 (52.33%), Query Frame = 3 Query: 129 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSF 641 PPVT A LA N +L P P H + + D +R LSP +H + HL++NM+S+LWKG++LE +GS F A ++A + G+ LL + + + AVGFSGVLFA+KV+ N + N+ G VP R+A WAEL I PG SF Sbjct: 28 PPVTLATLAVNVWFFLNP-----WKPLYHSC-ISVEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWF-AYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELAAIHFCTPGTSF 192
BLAST of CX296879 vs. ExPASy Swiss-Prot
Match: Y3846_ARATH (Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 59/175 (33.71%), Postives = 93/175 (53.14%), Query Frame = 3 Query: 129 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLV---LFFDYERAYYSEYAVGFSGVLFAMKVVLNSRS-EDYTNVHGLL-VPARYAAWAELIIIQMFVPGVS 638 P +T++++ +IYL L + + +EV F P I+ + RF+ + +H S H+ +NMM+L+ G +LE MGS + V LL + + LL SL F+ Y+ +E A+GFSG+LF+M V+ S S +V GL VPA+ W LI+ Q+ + VS Sbjct: 23 PFLTSSVVVVCGVIYL--ICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTV-LLATTNAVLHLLIASLAGYNPFYQYDH-LMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVS 193 The following BLAST results are available for this feature:
BLAST of CX296879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296879 ID=CX296879; Name=CX296879; organism=Citrus clementina; type=EST; length=728bpback to top |