CX296890

Overview
NameCX296890
Unique NameCX296890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig617 contig Ccv1_Contig617:22..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296890 vs. ExPASy Swiss-Prot
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:  103 MEYTTKRSQGGLLEGLYRVIMRRNSIYVTFIIAGAFAGERAVDYGVRKIWEHNNVGKRYEDIPVLGQRQSEE 318
            ME   +RS GG+LEG YR++MRR  +YVTF+IAGA  GERAVDYGV+ +WE NNVGKRYEDI VLGQR  +E
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYEDISVLGQRPVDE 72
The following BLAST results are available for this feature:
BLAST of CX296890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU6.790e-2368.06Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionC05803H11SK FerrChloL1 Citrus clementina cDNA clone C05803H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296890 ID=CX296890; Name=CX296890; organism=Citrus clementina; type=EST; length=587bp
TTCGGCACGAGGCCTCGCGCCGAATTCGGCACGAGGCGAACCCTAAATCA
ATCACTGTATTGCAGATCAATCAGAGCGAATCGAATTCCTGAACGAACAG
CCATGGAGTATACAACCAAACGAAGCCAAGGAGGCCTCCTCGAAGGTCTT
TACAGAGTCATCATGCGCCGCAACTCCATCTACGTAACCTTCATCATCGC
CGGCGCTTTCGCTGGTGAACGGGCTGTGGATTATGGGGTTCGCAAAATCT
GGGAGCACAACAATGTTGGGAAACGATATGAAGACATTCCAGTTTTGGGG
CAAAGGCAATCAGAAGAGTAGTACCTCTCCTGTTCATTCTGAAGTTTTAT
ATAAAAAATTTGAAAGGGGCGTCCAATGTAATGGATAGCTGTTTTATGTT
GCAATAAATTTTTTGTATGCTTGAGTGCATCAGACGTGTTTTTCAAGCTT
GGTTTCAATCAAATAGGTTTTGGAGTTATTGAATTGATGTGAATTGCGTA
TTGCTTCAACTATTTGTCCGAGAACGTGTTCTTGCACTTGTTCAGTTTAT
AGAACATTAATTTGAATTGTAAAAAAAAAAAAAAAAA
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