CX297509

Overview
NameCX297509
Unique NameCX297509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9438 contig Ccv1_Contig9438:174..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.052e-85
Identity = 154/225 (68.44%), Postives = 178/225 (79.11%), Query Frame = 2
Query:   29 RSHRVVGDAADHDMAGGSSPTC----CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            RSHR  G A      G +        CWA LP ELLRE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD  L+CFI+RNR+TQTY+LY+ LT ALADDGKFLLAARKCR+ TCTDY+ISL   DMSKGS+TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V+HISYELNVLG+RG
Sbjct:   25 RSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISYELNVLGARG 249          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.549e-81
Identity = 149/222 (67.12%), Postives = 181/222 (81.53%), Query Frame = 2
Query:   29 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            RS RVV D +    A   S   CWA++P ELLR++L +IE ++  WPSR++VV+CAGVCR+WR+I KEIV+VPELS  LTFPIS+KQPGPR  L+QC+I RNRS QTY+LYL L  A + DDGKFLLAA++ RR TCTDYIISL+ DD+S+GS+TY+GKLRSNFLGTKF VYD QP + G ++TR+RS+RL +LKQVSPRIP GNY VAHISYELNVLGSRG
Sbjct:   32 RSQRVVQDTSVPVDAFKQS---CWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVAHISYELNVLGSRG 250          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.637e-77
Identity = 132/199 (66.33%), Postives = 162/199 (81.41%), Query Frame = 2
Query:   95 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            CW  LP ELLRE+LA++E ++  WP RR VVACAGVCRSWR I +EIV+ PE SG LTFPIS+KQPGPRD  ++CFI RNR+TQTY+LY+ LT+AL DDGKFLLAARKCRR TCT+Y+ISL  +D+SK + +Y+GKLRSNFLGTKF +YD  PP+AG  +++ +S R+     +SPRIP GNY V+HISYELNVLGSRG
Sbjct:   54 CWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPAGNYPVSHISYELNVLGSRG 252          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.598e-76
Identity = 149/225 (66.22%), Postives = 173/225 (76.89%), Query Frame = 2
Query:   20 MWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            M  R HRVV  AA       SS    W+ LP+ELLREIL ++E  D   WPSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ+YHLYL LT +L D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNFLGTKF V+DG    A AKM +SRS   +N  +VSPR+P G+Y +AHISYELNVLGSRG
Sbjct:   10 MRSRPHRVVHAAAS---TANSSDPFSWSELPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRS---SNFIKVSPRVPQGSYPIAHISYELNVLGSRG 227          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.072e-74
Identity = 147/230 (63.91%), Postives = 170/230 (73.91%), Query Frame = 2
Query:   20 MWRRSHRVVGD---AADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            M  R HRVV D   AA  D    SS    W+ +P+ELLREIL ++EAAD   WPSRRSVVACAGVCR WR +  E V VPE+S  LTFPIS+KQPGPRD L+QCFIKRNR TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIISL SDDMS+ S  Y+GK+RSNFLGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+Y VAHI+YELNVLGSRG
Sbjct:   10 MRSRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAAKLRKSRS---YNPAKVSAKVPLGSYPVAHITYELNVLGSRG 236          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.519e-68
Identity = 124/223 (55.61%), Postives = 173/223 (77.58%), Query Frame = 2
Query:   29 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTR-SRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            +S   V +  D D+    S    WA+LP ELLR+++ ++EA++S WPSR+ VV+CA VC++WR++ KEIV  PE  G LTFP+S+KQPGPRD ++QCFIKR++S  TYHLYL L+ A LAD GKFLL+A++ R+ TCT+Y+IS+ +D++S+ SSTY+GKLRSNFLGTKFI+YD QP + GA +    RS+R  N K+VSP++P G+Y++A ++YELNVLG+RG
Sbjct:   39 KSQSTVHELCDADLIIQESR---WASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSGSYNIAQVTYELNVLGTRG 258          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.859e-66
Identity = 120/226 (53.10%), Postives = 172/226 (76.11%), Query Frame = 2
Query:   29 RSHRVVGDAADHDMAGGSSP---TCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRS-RSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            RSH  V +  D   A  ++    + CWANLP ELLR+++ ++EA+++AWPSR++VVACA VCR+WR + +EIVK PE  G +TFP+S+KQPGPR+  +QCFIKR++STQTY+LYL L++A L + GKFLL+A++  RATCT+Y I + +D+ S+ S+ Y+GKLRSN LGTKF++YD QPP   A +++S +++R    ++VSP+ P   YS+A +SYELNVLG+RG
Sbjct:   33 RSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSSTYSIAQVSYELNVLGTRG 258          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.996e-65
Identity = 119/203 (58.62%), Postives = 160/203 (78.82%), Query Frame = 2
Query:   98 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH----AGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            WANLP ELLR+++ ++E ++S WP+RR VVACA VCRSWR + KEIV+ PELSG +TFP+S+KQPGPRD  +QCFIKR++S  TYHLYL L+ A L ++GKFLL+A++ RR T T+Y+IS+H+D +S+ S+TY+GK+RSNFLGTKFI+YD QP +    A A      S R  + K+VSP++P G+Y +A +SYELNVLG+RG
Sbjct:   57 WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYS-KRVSPKVPSGSYKIAQVSYELNVLGTRG 258          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.404e-65
Identity = 113/200 (56.50%), Postives = 163/200 (81.50%), Query Frame = 2
Query:   98 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAK-MTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            WANLP  LLR+++ K++ ++S WP+R+ VVACAGVC++WR + K+IVK PE SG LTFP+S+KQPGPRD ++QC+IKR++S  TYHLYLSL+ A L + GKFLL+A++ RRAT T+Y+IS+ +D++S+ SSTY+GKL+SNFLGTKFIVYD  P +  ++ ++    +R  N K+VSP++P G+Y++A ++YELN+LG+RG
Sbjct:   55 WANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVPSGSYNIAQVTYELNLLGTRG 254          
BLAST of CX297509 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.404e-65
Identity = 116/200 (58.00%), Postives = 162/200 (81.00%), Query Frame = 2
Query:   98 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH-AGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRG 691
            W  LP ELLR+++ ++E  +S WPSR+ VVACA VCR+WR+I K+IV+ PE+ G LTFP+S+KQPGPRD L+QCFIKR++S  TY+LYL L+ A L+++GKFLLAA++ RRAT T+YIIS+ S ++S+ S+ Y+GK+RSNFLGTKF+VYD QPP+ AG+ M+    +R  + ++VSP++P G+Y +AH+ YELNVLG+RG
Sbjct:   59 WVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTGSYPIAHVKYELNVLGTRG 258          
The following BLAST results are available for this feature:
BLAST of CX297509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
TLP6_ORYSJ5.052e-8568.44Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP3_ARATH7.549e-8167.12Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP11_ORYSJ8.637e-7766.33Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP9_ARATH5.598e-7666.22Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH3.072e-7463.91Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP8_ORYSJ2.519e-6855.61Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP14_ORYSJ6.859e-6653.10Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP1_ARATH1.996e-6558.62Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP5_ARATH3.404e-6556.50Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP12_ORYSJ3.404e-6558.00Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC06002C04SK RindPdig24 Citrus clementina cDNA clone C06002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297509 ID=CX297509; Name=CX297509; organism=Citrus clementina; type=EST; length=693bp
GCAGGAATTCGGCACGAGGATGTGGCGGAGGTCGCACCGCGTGGTCGGCG
ACGCGGCGGACCACGACATGGCCGGCGGCTCTTCTCCTACGTGCTGCTGG
GCGAACCTGCCGCAGGAGCTGCTGAGAGAGATTCTGGCCAAAATCGAGGC
GGCGGATAGCGCGTGGCCGTCACGGAGAAGCGTTGTCGCGTGCGCTGGAG
TTTGTCGGAGCTGGAGACAGATCACTAAAGAGATTGTCAAAGTTCCTGAA
CTTTCCGGTTACTTGACTTTCCCCATCTCCGTCAAACAGCCTGGTCCAAG
GGATTATCTCCTCCAGTGCTTTATAAAGCGAAATCGGTCCACCCAAACAT
ATCACCTTTACCTCAGTTTAACTAATGCACTAGCAGACGATGGAAAGTTC
CTTCTTGCTGCCCGCAAGTGTAGACGTGCCACCTGTACAGATTATATTAT
CTCTTTACATTCTGATGATATGTCAAAAGGGAGCAGCACTTATCTTGGGA
AACTGAGATCAAATTTTTTAGGAACCAAGTTCATAGTCTATGATGGACAA
CCTCCCCATGCTGGAGCCAAGATGACAAGAAGTCGCTCCACAAGACTAGC
AAATTTGAAACAAGTTTCGCCTCGGATCCCTTTTGGGAACTATTCAGTTG
CTCACATCTCATATGAATTGAATGTGTTGGGTTCCAGGGGTCC
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