CX297517

Overview
NameCX297517
Unique NameCX297517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig727 contig Ccv1_Contig727:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.954e-36
Identity = 81/101 (80.20%), Postives = 83/101 (82.18%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQAS 671
            MARIKVHELRQK+K +               RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ S
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQS 101          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.083e-36
Identity = 81/101 (80.20%), Postives = 83/101 (82.18%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQAS 671
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQAS
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQAS 101          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.549e-35
Identity = 81/101 (80.20%), Postives = 82/101 (81.19%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQAS 671
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQAS
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQAS 101          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.689e-35
Identity = 80/101 (79.21%), Postives = 82/101 (81.19%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQAS 671
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQAS
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQAS 101          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.312e-34
Identity = 80/101 (79.21%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQAS 671
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQAS
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQAS 101          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ 665
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHE 99          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ 665
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHE 99          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL35_HIPCM (60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 7.975e-24
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQAS 671
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ S
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEES 101          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL35_DANRE (60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 7.975e-24
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ 665
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRAIRR+LTKH+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHE 99          
BLAST of CX297517 vs. ExPASy Swiss-Prot
Match: RL35_XENTR (60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  369 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ 665
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHE 99          
The following BLAST results are available for this feature:
BLAST of CX297517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES6.954e-3680.2060S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH9.083e-3680.2060S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH1.549e-3580.2060S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH7.689e-3579.2160S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH1.312e-3479.2160S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT6.106e-2460.6160S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE6.106e-2460.6160S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HIPCM7.975e-2459.4160S ribosomal protein L35 OS=Hippocampus comes GN=... [more]
RL35_DANRE7.975e-2460.6160S ribosomal protein L35 OS=Danio rerio GN=rpl35 ... [more]
RL35_XENTR1.777e-2359.6060S ribosomal protein L35 OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionC06002D01SK RindPdig24 Citrus clementina cDNA clone C06002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297517 ID=CX297517; Name=CX297517; organism=Citrus clementina; type=EST; length=673bp
AATTCGGCACGAGGATCCCGATGCGGATGCCGATGCCGATACCAATATTC
GCGCTCCTCTTTACCCTCATCATCCCGCTGCTGCTCCATCTCCATCTCCC
TCTGATCCCGCCGTCTGATTATCAGTCATCCCCTTTGATTTCACTTCAAC
TGCCAAATTTGCCCATTTCACTTTATTTTTTTTATTTTTTTTTCCTGCTT
TCTTTGGCAACTTTTATATTTTGTATCTGCCTGTGATGATGGCTTCCCCA
GTTTGCTGTGCTATGTAATTGAGTTGTATTATTTATATACCATCGGATTT
CGTATGGAGGGAAATAAGAATTTATCATCATCGAATGACATGGAATTTCG
TGGAGAAAAAAAATAGCAATGGCTAGGATCAAGGTGCATGAGCTGAGGCA
GAAATCGAAGGTGGATCTTTTGAACCAGTTGAAGGAACTCAAGGCTGAGC
TCGCCCTCCTTCGCGTTGCTAAGGTCACCGGCGGTGCCCCTAACAAGCTA
TCCAAGATCAAGGTGGTGAGGTTATCGATCGCACAAGTGTTGACTGTCAT
TTCACAAAAGCAGAAGGCTGCATTGAGGGAGGCATACAAGAATAAGAAGT
TCTTGCCCCTTGATCTGCGTCCCAAGAAGACCCGGGCTATCAGGAGAAGG
CTTACCAAGCACCAGGCTTCACT
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