CX297539

Overview
NameCX297539
Unique NameCX297539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297539_ssr343 microsatellite CX297539_ssr343:343..362. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.537e-31
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 3
Query:    3 YQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            YQSHF+EYIKKGI+AD LE LYKKVHAAIRA+P  KKS+KP PK HKRYNLKKLTY+ERKA+LVERLNALNSA D DD+
Sbjct:  218 YQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAADGDDD 296          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.050e-29
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 3
Query:    3 YQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            +Q+HF+EY+KKGIDADG+EALYKKVHAAIRADPT  KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+   DD+
Sbjct:  219 FQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.050e-29
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 3
Query:    3 YQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            +Q+HF+EY+KKGIDADG+EALYKKVHAAIRADPT  KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+   DD+
Sbjct:  219 FQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.023e-29
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 3
Query:    3 YQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            +Q+HF+EY+KKGIDADG+E+LYKKVHAAIRADPT  KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+   DD+
Sbjct:  219 FQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 3
Query:    6 QSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            Q+HF+ YIKKG++A+ +E LYKKVHAAIRADP  KK+ KPAPK+HKRYNLKKLTYEERK KL+ER+ ALN A  +DD+
Sbjct:  219 QTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDD 296          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.441e-26
Identity = 54/78 (69.23%), Postives = 67/78 (85.90%), Query Frame = 3
Query:    6 QSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            Q+HF+ YIKKG++A+ +E +YKKVHAAIRA+P  KK+EK APKEHKRYNLKKLTYEERK KL+ER+ ALN A  +DD+
Sbjct:  219 QTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDD 296          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.191e-26
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 3
Query:    3 YQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDDE 239
            YQSHF+ YIK  +  D +E +YKKVHAAIR DP+ KKS+K  PK HKRYNLKKLTYEERKAKL+ERLNALN+A   DD+
Sbjct:   37 YQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDD 115          
BLAST of CX297539 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 YQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTTKKSE-KPAPKEHKRYNLKKLTYEERKAKLVER 200
            ++  F++YIK G+ AD +EA+YKK H AIRADP+ KK E K    + KR+N +KLT  ERK ++ ++
Sbjct:  219 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
The following BLAST results are available for this feature:
BLAST of CX297539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL5_CUCSA2.537e-3181.0160S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ORYSJ4.050e-2975.9560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI4.050e-2975.9560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ9.023e-2974.6860S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ARATH3.791e-2770.5160S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ARATH1.441e-2669.2360S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL5_SOLME4.191e-2669.6260S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_BOMMO6.496e-1147.7660S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
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Properties
Property NameValue
Genbank descriptionC06002E12SK RindPdig24 Citrus clementina cDNA clone C06002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297539 ID=CX297539; Name=CX297539; organism=Citrus clementina; type=EST; length=486bp
AGTATCAATCTCACTTCACTGAGTACATCAAGAAAGGAATTGATGCTGAT
GGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCC
TACAACGAAGAAATCTGAGAAGCCAGCTCCCAAAGAACATAAGAGGTATA
ATTTGAAGAAGCTTACTTACGAGGAAAGGAAGGCGAAGCTGGTTGAAAGG
CTGAATGCCCTTAACTCGGCAGTTGATGAGGATGACGAATGAAAGCATCA
TAACTAGATATGAATTCGAAATGTGGCGAATCTGCAGTACACATTTGTTG
CAGTTCCTAGAACCTAAAAATGTTTCTTTGCCCAGTTTTTATTTTTATTT
TATTTTATTTTATTTTTATCTTCTGTTTTGGCAATTTTGCAGCTTGGATT
TCTCATTAGATAACAAGGTTTTGAGATTTTTAGCTTTGTTGAAATGCAAT
TTCAATTTTGACTTAAAAAAAAAAAAAAAAAAAAAA
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