CX297545

Overview
NameCX297545
Unique NameCX297545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4950 contig Ccv1_Contig4950:375..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.242e-21
Identity = 44/54 (81.48%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:   45 GACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 42/54 (77.78%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGK+ SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEEEL
Sbjct:   45 GACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.058e-20
Identity = 41/54 (75.93%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:   43 GACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.058e-20
Identity = 41/54 (75.93%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:   43 GACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 43/54 (79.63%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD  IQ+HKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.813e-20
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGK+ SGS+DQSD SFLDD+Q+EAGY+LTC++YPTSDC IQ+H+EE L
Sbjct:   45 GACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98
[Close]
BLAST of CX297545 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.518e-19
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 162
            GACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:   98 GACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151
The following BLAST results are available for this feature:
BLAST of CX297545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FER_MASLA1.242e-2181.48Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_NOSMU1.373e-2081.48Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP1.373e-2081.48Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO1.373e-2081.48Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_CHLFR2.342e-2077.78Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_SYNY43.058e-2075.93Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY33.058e-2075.93Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER1_ANAVT3.994e-2079.63Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_SPIMA6.813e-2075.93Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER3_MAIZE1.518e-1977.78Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]

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Properties
Property NameValue
Genbank descriptionC06002F06SK RindPdig24 Citrus clementina cDNA clone C06002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297545 ID=CX297545; Name=CX297545; organism=Citrus clementina; type=EST; length=355bp
GGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCA
GTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTGC
TGACTTGCATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCACAAG
GAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGTA
TGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACCT
ACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCTTTAA
ATTTTCATTTGGTTATACTATTACTGGCATTTTGGGAAAAAAAAAAAAAA
AAAAA
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