CX297547

Overview
NameCX297547
Unique NameCX297547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.326e-67
Identity = 128/153 (83.66%), Postives = 134/153 (87.58%), Query Frame = 1
Query:   49 MADIEYNAEEAAEIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            MAD EYNAEEAAE+KK+R FRKFSYRG+               VVHARARR+ NRGLKR+PMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSV+GIYSGKEFNQVEIKPEMVGHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    1 MAD-EYNAEEAAELKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.712e-55
Identity = 105/153 (68.63%), Postives = 120/153 (78.43%), Query Frame = 1
Query:   49 MADIEYNAEEAAEIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            MAD+    +      K+R FRKFSYRG+               + HARARRRF RGLKRKPM LIKKLRKAK++A P EKP+ V+THLR+MI+VPEMIGS+IG+Y+GK FNQVEIKPEM+GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    1 MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 105/154 (68.18%), Postives = 122/154 (79.22%), Query Frame = 1
Query:   49 MADIEYNAEEAAEIK-KRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            MAD+E   E AA  + K+R FRK+SYRG+               +  ARARRRF RGLKRKPM LIKKLRKAK++A   EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    1 MADVEVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.570e-53
Identity = 100/138 (72.46%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   94 KRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            K+R F+KFSYRG+               + HARARRRF RGLKR+PM LIKKLRKAK+EA   EKP+ V+THLR+MI+VPEMIGS+IG+Y+GK FNQVEIKPEM+GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   14 KKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.500e-51
Identity = 99/153 (64.71%), Postives = 120/153 (78.43%), Query Frame = 1
Query:   49 MADIEYNAEEAAEIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            MAD+E     AA + K+R F+KF+++G+               +  +R RRRF+RGL RKPM LIKKLRKAK+EA   EKP+ V+THLR+MI+VPEMIGS+IG+Y+GK FNQVEIKPEM+GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:    1 MADVEPEVA-AAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.500e-51
Identity = 99/153 (64.71%), Postives = 120/153 (78.43%), Query Frame = 1
Query:   49 MADIEYNAEEAAEIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            MAD+E     AA + K+R F+KF+++G+               +  +R RRRF+RGL RKPM LIKKLRKAK+EA   EKP+ V+THLR+MI+VPEMIGS+IG+Y+GK FNQVEIKPEM+GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:    1 MADVEPEVA-AAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 1
Query:   85 EIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            E KK+R FRKF+YRG+               +  AR RRR NRGL+RK   L+K+LRKAK+EA P EKP++VKTHLRDMI++PEM+GS++G+Y+GK FNQVEIKPEM+GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    5 EQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 1
Query:   85 EIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            E KK+R FRKF+YRG+               +  AR RRR NRGL+RK   L+K+LRKAK+EA P EKP++VKTHLRDMI++PEM+GS++G+Y+GK FNQVEIKPEM+GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    5 EQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 1
Query:   85 EIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            E KK+R FRKF+YRG+               +  AR RRR NRGL+RK   L+K+LRKAK+EA P EKP++VKTHLRDMI++PEM+GS++G+Y+GK FNQVEIKPEM+GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    5 EQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX297547 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 1
Query:   85 EIKKRRQFRKFSYRGIXXXXXXXXXXXXXXXVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 507
            E KK+R FRKF+YRG+               +  AR RRR NRGL+RK   L+K+LRKAK+EA P EKP++VKTHLRDMI++PEM+GS++G+Y+GK FNQVEIKPEM+GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    5 EQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
The following BLAST results are available for this feature:
BLAST of CX297547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PODAN3.326e-6783.6640S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_ELAOL1.712e-5568.6340S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_ORYSJ3.229e-5468.1840S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS15_PICMA3.570e-5372.4640S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS154_ARATH1.500e-5164.7140S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH1.500e-5164.7140S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS15_RAT1.270e-5066.6740S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]
RS15_PONAB1.270e-5066.6740S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]
RS15_PIG1.270e-5066.6740S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE1.270e-5066.6740S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]

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Properties
Property NameValue
Genbank descriptionC06002F09SK RindPdig24 Citrus clementina cDNA clone C06002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297547 ID=CX297547; Name=CX297547; organism=Citrus clementina; type=EST; length=660bp
GCTTTTCGAGATACGGTCGAAAGGCGGTTTATAGGAATATCTGCAAAAAT
GGCTGACATCGAATACAACGCCGAGGAGGCTGCCGAGATCAAGAAGAGAA
GACAGTTCCGCAAGTTTTCTTACCGCGGCATTGACCTCGACCAGCTCCTC
GACCTTTCCTCCGAGCAGCTCCGTGATGTCGTTCACGCCCGTGCCCGCAG
ACGTTTCAACCGCGGTCTGAAGCGCAAGCCCATGGGTCTCATCAAGAAGC
TCCGCAAGGCCAAGCAGGAGGCTAAGCCCAACGAGAAGCCCGATCTCGTC
AAGACCCACCTCCGTGACATGATTGTCGTCCCCGAGATGATCGGCTCCGT
CATCGGTATCTACTCCGGTAAGGAGTTCAACCAGGTTGAGATCAAGCCCG
AGATGGTTGGCCACTACCTGGCTGAGTTCTCTATCTCTTACAAGCCCGTC
AAGCACGGTCGTCCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATTCC
CCTCAAGTAAACGATTTCAAACGATTCCCCTCGGAGTGGCGTGTGGAGGA
AATGGTGCTGGGAAAGCAAAAATGGAATTCAGCAAAACTCTCAACTGGGC
TCTTTTTTTCAGCATGTATTTCCAGTGCGGGTCAGCTGTTTCCAACTCAA
TTTAAGATCT
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