CX297556

Overview
NameCX297556
Unique NameCX297556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_DICDI (Protein CLP1 homolog OS=Dictyostelium discoideum GN=clp1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.740e-47
Identity = 90/192 (46.88%), Postives = 130/192 (67.71%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            +G+GY++LL  ID FKAN+++V+  EKL+S +      + N + ++KL KSGGV  R    R+K R  RI+EYF G+ ++LSPH  V +F D  +YR GGGP AP SALPIG     +PL+I  V    ++ H + A+SYAK A  I  SNVAGF++V+++D + K IT ++P+PG LPS++L+ GTL W+E
Sbjct:  267 DGLGYKILLQNIDVFKANLIIVMDNEKLYSDISSHYSQKDNSIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVSIYRTGGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYVSDIDMETKKITVISPAPGPLPSRFLLLGTLKWME 458          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_ANOGA (Protein CLP1 homolog OS=Anopheles gambiae GN=cbc PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLET 594
            +G GY  +LH ++ F+   + VL QE+L++ +LRDV   +  V VV L KSGGVV R    R +AR  RIREYFYG    L PH+    FSD  ++++ G P  P S LP+G     N  ++V V    +LLH +LAVS+A+  D+ +I +NVAGFI VTNV+  ++ +T L+P P  LP   L+   L ++++
Sbjct:  233 KGSGYSHILHTVEAFEVTAIFVLDQERLYNELLRDV---KGTVQVVFLPKSGGVVERTKSQRTEARDQRIREYFYGSKMPLFPHSFDVKFSDIKIFKV-GSPPLPDSCLPLGMKAEDNYTKLVAVQPGPQLLHHILAVSFAESTDENVIQTNVAGFICVTNVNMDKQVLTVLSPQPRPLPQTILLVSDLQFMDS 422          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_CULQU (Protein CLP1 homolog OS=Culex quinquefasciatus GN=cbc PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 83/194 (42.78%), Postives = 117/194 (60.31%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLET 594
            +G GY  +LHAI  F+ N V VL QE+L++ +LRDV +    V +V L KSGGVV R    R +AR  R+REYFYG    L PH+    FSD  ++++ G P  P S LP+G     N  ++V V    +LLH +LAVS+A+   D +I SNVAGFI VTNV  +++ +T L+P P  LP   L+     ++++
Sbjct:  233 KGGGYRHILHAIKAFEVNAVFVLDQERLYNELLRDVERA---VQIVFLPKSGGVVERTKSQRAEARDNRVREYFYGSKMPLYPHSFDVKFSDVKIFKV-GSPALPDSCLPLGMKREDNYTKLVAVQPGPQLLHHILAVSFAESTDDNVIQSNVAGFICVTNVSMEKEVLTILSPQPRPLPQTILLVSDFQFMDS 422          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_NEMVE (Protein CLP1 homolog OS=Nematostella vectensis GN=v1g236308 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 74/191 (38.74%), Postives = 121/191 (63.35%), Query Frame = 1
Query:   22 GVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            G+GY +++HA   FK NV++VL QE+L++ L++   ++  V +V L KSGGVV R+ + R+K R  R+R YFYG   +L PH+    FSD  +++I G P  P S LP+G D   N  ++VPV   ++L H +LA+S A+  ++ ++ +NV GF+ V  VD  R+ +  L+P+P  LP K+L+   + +++
Sbjct:  239 GMGYRIIVHAATAFKVNVIVVLDQERLYNDLKNQFGDK--VQIVHLPKSGGVVVRSRETRRKVRDERLRSYFYGQQANLYPHSFEVKFSDVKLFKI-GAPLVPDSCLPLGMDQGQNETKLVPVVPTKDLKHCLLAISAAESLEEDLVQTNVIGFLVVNEVDLDREVMVVLSPAPRPLPRKFLLLSEIKFMD 426          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_AEDAE (Protein CLP1 homolog OS=Aedes aegypti GN=cbc PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 81/191 (42.41%), Postives = 116/191 (60.73%), Query Frame = 1
Query:   28 GYELLLHAIDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLET 594
            GY  +LHA   F+ N + VL QE+L++ +LRDV      V VV L KSGGVV R    R +AR  RIREYFYG    L PH+    FSD  ++++ G P  P S LP+G     N  ++V V    +LLH +LAVS+A+  ++ +I SNVAGFI VT+V+ +++ +T L+P P  LP   L+   L ++++
Sbjct:  236 GYHHILHAAKEFEVNAIFVLDQERLYNELLRDVASK--TVQVVYLPKSGGVVKRTRSQRAEARDNRIREYFYGSKMPLYPHSFDVKFSDVKIFKV-GSPALPDSCLPLGMKKEDNFTKLVAVQPSMQLLHHILAVSFAESIEENVIQSNVAGFICVTDVNMEKEVLTILSPQPRPLPQTILLVSDLQFMDS 423          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_CHICK (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Gallus gallus GN=CLP1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 80/192 (41.67%), Postives = 118/192 (61.46%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            +G GY+ L+HA   F+ +VV+VL QE+L++ L+  L +   V  V L KSGGVV R+   R++ R  RIREYFYG      PHA    FSD  +Y++ G P  P S LP+G     N L++VPV   ++++H +L+VS A   D  IS ++VAGFI VT VD +R+  T L+P+P  LP  +L+   + +++
Sbjct:  235 KGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHF--VRTVLLPKSGGVVERSKDFRRECRDDRIREYFYGFRGCFYPHAFDVKFSDVKIYKV-GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSMADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIRFMD 423          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_RAT (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Rattus norvegicus GN=Clp1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 77/192 (40.10%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            +G GY+ L+HA   F+ +VV+VL QE+L++ L+  L +   V  V L KSGGVV R+   R++ R  RIREYFYG      PHA    FSD  +Y++ G P  P S LP+G     N L++VPV   ++++H +L+VS A+  ++ +S ++VAGFI VT+VD + +  T L+P+P  LP  +L+   + +++
Sbjct:  235 KGYGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHF--VRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKV-GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_MOUSE (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Mus musculus GN=Clp1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 77/192 (40.10%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            +G GY+ L+HA   F+ +VV+VL QE+L++ L+  L +   V  V L KSGGVV R+   R++ R  RIREYFYG      PHA    FSD  +Y++ G P  P S LP+G     N L++VPV   ++++H +L+VS A+  ++ +S ++VAGFI VT+VD + +  T L+P+P  LP  +L+   + +++
Sbjct:  235 KGYGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHF--VRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKV-GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_MACFA (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Macaca fascicularis GN=CLP1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 77/192 (40.10%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            +G GY+ L+HA   F+ +VV+VL QE+L++ L+  L +   V  V L KSGGVV R+   R++ R  RIREYFYG      PHA    FSD  +Y++ G P  P S LP+G     N L++VPV   ++++H +L+VS A+  ++ +S ++VAGFI VT+VD + +  T L+P+P  LP  +L+   + +++
Sbjct:  235 KGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHF--VRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKV-GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423          
BLAST of CX297556 vs. ExPASy Swiss-Prot
Match: CLP1_HUMAN (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens GN=CLP1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 77/192 (40.10%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   19 EGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 591
            +G GY+ L+HA   F+ +VV+VL QE+L++ L+  L +   V  V L KSGGVV R+   R++ R  RIREYFYG      PHA    FSD  +Y++ G P  P S LP+G     N L++VPV   ++++H +L+VS A+  ++ +S ++VAGFI VT+VD + +  T L+P+P  LP  +L+   + +++
Sbjct:  235 KGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHF--VRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKV-GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423          
The following BLAST results are available for this feature:
BLAST of CX297556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CLP1_DICDI5.740e-4746.88Protein CLP1 homolog OS=Dictyostelium discoideum G... [more]
CLP1_ANOGA1.467e-3441.75Protein CLP1 homolog OS=Anopheles gambiae GN=cbc P... [more]
CLP1_CULQU2.502e-3442.78Protein CLP1 homolog OS=Culex quinquefasciatus GN=... [more]
CLP1_NEMVE4.267e-3438.74Protein CLP1 homolog OS=Nematostella vectensis GN=... [more]
CLP1_AEDAE1.621e-3342.41Protein CLP1 homolog OS=Aedes aegypti GN=cbc PE=3 ... [more]
CLP1_CHICK2.118e-3341.67Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Gall... [more]
CLP1_RAT6.161e-3340.10Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Ratt... [more]
CLP1_MOUSE6.161e-3340.10Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Mus ... [more]
CLP1_MACFA1.051e-3240.10Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Maca... [more]
CLP1_HUMAN1.051e-3240.10Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC06002G06SK RindPdig24 Citrus clementina cDNA clone C06002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297556 ID=CX297556; Name=CX297556; organism=Citrus clementina; type=EST; length=709bp
AGGAATTCGGCACGAGGAGAAGGTGTAGGGTACGAGTTGCTTCTCCATGC
GATTGATACATTCAAAGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAAC
TTTTCAGCATGCTGAGGGATGTATTAAAGAACAGGCCTAATGTGGATGTT
GTGAAACTTCAAAAGTCGGGTGGTGTTGTATCCCGAAATTCAAAAGTTCG
TCAAAAGGCCAGAAGTTATAGGATAAGGGAATATTTTTACGGCCTCACAA
ATGATCTTTCCCCGCATGCTAATGTTGCTAATTTCAGCGATTTCCTAGTC
TATCGAATTGGAGGAGGACCACAGGCCCCAAGATCAGCTCTGCCAATTGG
AGCTGATCCTGTTGCCAACCCTCTAAGAATAGTTCCAGTGAATGTTGACC
AGGAGTTGCTCCATCTTGTTCTTGCTGTTTCATATGCAAAAGACGCTGAT
CAAATTATCTCAAGCAACGTGGCTGGTTTTATATTTGTTACAAACGTCGA
CACACAAAGGAAGACGATTACATATCTCGCACCCTCACCTGGGATGCTCC
CAAGCAAATATCTGATCGCAGGAACATTGACATGGCTTGAAACGTGAAGC
ATTTAGGAAAGAATCCAGTTATTAGTTTAGCATTTAAACTTCAGCATGTA
ATTGGGATGATTGAATTTTTATTTTTATTTTTATTTTGGATAGTTTTTAC
TAAATTATG
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