CX297570

Overview
NameCX297570
Unique NameCX297570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHS 699
            AKHN++DDCWL+I GKVYNV+ FLEDHPGGD+VLL++T K  TDDFEDVGHS
Sbjct:   15 AKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHSD 702
            +KHN   DCWL+ISGKVY+VTPF++DHPGGDEVLL++T K  T+DFEDVGHSD
Sbjct:   14 SKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSD 66          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHS 699
            ++HNN  DCWLVISGKVY+VT FL+DHPGGDEVLL+AT K  TDDFEDVGHS
Sbjct:   14 SQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHS 699
            A+HNN  DCWL+I+GKVY+VT FLEDHPGGD+VLL+AT K  TDDFED+GHS
Sbjct:   11 AQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHS 62          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHS 699
            + HNN  DCWL+ISGKVYNVT FLEDHPGG EVLL+AT K  TDDFED+GHS
Sbjct:   14 SNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHS 65          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHSD 702
            ++HN   DCWL+ISGKVY+VTPF++DHPGGDEVLL++T K  T+DFEDVGHSD
Sbjct:   14 SQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSD 66          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHSD 702
            ++HN   DCW+VI+GKVYNVT FLEDHPGGD+VLL++T K  TDDFEDVGHS+
Sbjct:   14 SEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSE 66          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHS 699
            ++H+  +DCWLVI GKVY+VT FL+DHPGG +VLL++T K  TDDFED+GHS
Sbjct:   13 SEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHS 64          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHSD 702
            AKHN   D WL+I   +Y+VT FL +HPGG+EVL+    K  T++FEDVGHS+
Sbjct:   15 AKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSN 67          
BLAST of CX297570 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 24/53 (45.28%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  544 AKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKGCTDDFEDVGHSD 702
            A+H   DD W++++GKVYN++ ++++HPGG+EV+L       T+ F+D+GHSD
Sbjct:   17 AQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSD 69          
The following BLAST results are available for this feature:
BLAST of CX297570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CYB5_ORYSJ4.981e-1976.92Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB51_ARATH1.449e-1873.58Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_TOBAC1.893e-1878.85Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_BOROF3.229e-1875.00Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5S_TOBAC3.229e-1876.92Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_BRAOB4.217e-1871.70Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB52_ARATH1.227e-1771.70Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE3.341e-1565.38Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_DROME1.716e-1154.72Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5_CANTR4.993e-1145.28Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
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Properties
Property NameValue
Genbank descriptionC06002H10SK RindPdig24 Citrus clementina cDNA clone C06002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297570 ID=CX297570; Name=CX297570; organism=Citrus clementina; type=EST; length=704bp
ATTCGGCACGAGGATTATGCATCTCCACCACCACCCTACTAAGCTCAAAA
CGCTTAGCCTCCAATAGAGTTGATTCATGTTTTAGTTTGAATAGTGAAAT
AAAGGAAGGCTCCGAGAGGAAAGGTCATGTATATCAAGCTTCCTATCTAA
GTCATTCAAATAATGGTCTGAGCATTTCATCTGAATACCACAATTTCCAA
TTCACAGACCAGACTGTTTCCACTTCTCTGATTGTCTCCATGTTCCACAT
GCTCTTGCTCTGCTGGACCCCCCAAAAAAAAAAAGGACGAACAGTGAGAT
TCTGGAGAAGTAGAAAGGATTAGGAAGCTGCTTTCTATTTTTTATAGTTT
GCTTCGTCATTTGCAGTTGGGTTTTTATTTATAATTTATTGTATATGCCA
TTGCTGTCTTGTACGATTCTATTTATTGTGAGCATTTGTTTCTTGGGCCT
TCTTCTGCTTTGTGTATTGAGATTGTCAGTAATAATAAGAAACGAAGACA
TTTCTGTCACAAAAAAAAACCTCGTGCCGAATTCGGCACGAGGGCAAAGC
ACAATAATAGAGATGATTGTTGGCTTGTAATTTCTGGAAAGGTCTATAAT
GTGACTCCGTTTCTCGAAGATCATCCTGGTGGTGATGAAGTCTTGCTAGC
TGCTACTGAGAAAGGATGCACAGACGACTTTGAAGATGTGGGTCACAGCG
ATTC
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