CX297667

Overview
NameCX297667
Unique NameCX297667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297667_ssr270 microsatellite CX297667_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFRH_SOLTU (Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.155e-25
Identity = 54/73 (73.97%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 228
            + L+R+YVPEEQVLKNIQEA+ P+NV LSI H+AFVKGD TNF+IEPSFGVEAS++YPDVKYT +DE L+Q+V
Sbjct:  236 KNLERLYVPEEQVLKNIQEASVPMNVGLSIYHTAFVKGDHTNFEIEPSFGVEASEVYPDVKYTPIDEILNQYV 308          
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFRH_MAIZE (Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.478e-22
Identity = 47/73 (64.38%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 228
            +T +R YVPEE VLK IQE+  P+N+IL+I H+AFV+G+QT F+I+P+ GV+AS+LYPDVKYTTVDEYL++F+
Sbjct:  237 KTFRREYVPEEAVLKQIQESPIPLNIILAIGHAAFVRGEQTGFEIDPAKGVDASELYPDVKYTTVDEYLNRFL 309          
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFRH_ARATH (Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQF 225
            ++L++ ++PEEQ+LK+IQE+  P+NV+LSI H+ FV GD TN  IEPSFGVEAS+LYPDVKYT+VDEYLS F
Sbjct:  239 KSLEKTHLPEEQLLKSIQESPIPINVVLSINHAVFVNGD-TNISIEPSFGVEASELYPDVKYTSVDEYLSYF 309          
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFRH_TOBAC (Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16
Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 228
            +TL+++Y+ EE +L+ +QE   P+   L+I HS FV GD  NF+++P  GVEA++LYP VKYTTVDE+ ++FV
Sbjct:  238 KTLEKLYLSEEDILQIVQEGPLPLRTNLAICHSVFVNGDSANFEVQPPTGVEATELYPKVKYTTVDEFYNKFV 310          
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFR_MEDSA (Isoflavone reductase OS=Medicago sativa GN=IFR PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.852e-16
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 228
            +TL++ YV EEQVLK+IQE++ P N +L++ HS  +KGD   ++I+P+  +EAS+ YPDV YTT DEYL+QFV
Sbjct:  247 KTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDVTYTTADEYLNQFV 318          
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFR_PEA (Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.849e-15
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 228
            +TL++ YV EEQVLK+IQ ++ P N +L++ HS  +KGD   ++I+P+  VEA   YPDVKYTT DEYL+QFV
Sbjct:  247 KTLEKTYVSEEQVLKDIQTSSFPHNYLLALYHSQQIKGDAV-YEIDPAKDVEAYDAYPDVKYTTADEYLNQFV 318          
BLAST of CX297667 vs. ExPASy Swiss-Prot
Match: IFR_CICAR (Isoflavone reductase OS=Cicer arietinum GN=IFR PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.767e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   10 QTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 228
            +TL++ Y+ EE+VLK+I  +  P N +L++ HS  +KGD   ++I+P+   EA  LYPDVKYTT DEYL QFV
Sbjct:  247 KTLEKSYISEEKVLKDINVSTFPHNYLLALYHSQQIKGDAV-YEIDPAKDAEAYDLYPDVKYTTADEYLDQFV 318          
The following BLAST results are available for this feature:
BLAST of CX297667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IFRH_SOLTU1.155e-2573.97Isoflavone reductase homolog OS=Solanum tuberosum ... [more]
IFRH_MAIZE3.478e-2264.38Isoflavone reductase homolog IRL OS=Zea mays GN=IR... [more]
IFRH_ARATH1.012e-2166.67Isoflavone reductase homolog P3 OS=Arabidopsis tha... [more]
IFRH_TOBAC2.184e-1650.68Isoflavone reductase homolog A622 OS=Nicotiana tab... [more]
IFR_MEDSA2.852e-1654.79Isoflavone reductase OS=Medicago sativa GN=IFR PE=... [more]
IFR_PEA1.849e-1554.79Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 ... [more]
IFR_CICAR7.767e-1450.68Isoflavone reductase OS=Cicer arietinum GN=IFR PE=... [more]
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Properties
Property NameValue
Genbank descriptionC06004A01SK RindPdig24 Citrus clementina cDNA clone C06004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297667 ID=CX297667; Name=CX297667; organism=Citrus clementina; type=EST; length=472bp
GAAGATTGGCAAACCCTCCAAAGGGTGTACGTTCCGGAGGAGCAAGTCCT
AAAGAATATTCAAGAAGCTGCACCTCCAGTCAATGTGATATTATCAATTC
AGCACTCTGCTTTCGTGAAGGGAGATCAAACCAACTTCCAGATTGAACCA
TCGTTTGGAGTTGAAGCCTCGCAGCTCTATCCTGATGTCAAGTACACTAC
AGTTGATGAGTATCTCAGTCAGTTTGTGTAAACCCTTCTCTGTTGAGCTG
CAGCTTGCAGGATCTTGGGAAATAAATAAATAATTGGCTTTTTGCCATCT
TTGGTTTCTATATGTAAGCATTATGGTTGTTGGCCTTACTTTCGTTTGTT
TCTCAATGTGTAGTTTGTAATTAACACCATATTGTGTCGACTATGTCGGT
ACACAGTGATCAAATAAAGTAGCCCCATGTGATTAATCTNNAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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