CX297668

Overview
NameCX297668
Unique NameCX297668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10299 contig Ccv1_Contig10299:120..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: PHLP3_DICDI (Phosducin-like protein 3 OS=Dictyostelium discoideum GN=phlp3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 3
Query:    9 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVI 329
            E DFL EVTG++  + HFYH +F RCKI+DK L+ LA  H+GTKF+K++AE A FF  KLGI+ LP ++ F  GIA+DR VGF++ GG D F  + L + + K GV+
Sbjct:   53 EQDFLKEVTGTDNVVVHFYHSDFQRCKILDKSLEILAKTHLGTKFLKVNAEKAQFFTGKLGIRILPTLVFFSNGIAVDRCVGFEEFGGIDSFKIEQLAIRISKAGVL 159          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: TXND9_MOUSE (Thioredoxin domain-containing protein 9 OS=Mus musculus GN=Txndc9 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 57/110 (51.82%), Postives = 71/110 (64.55%), Query Frame = 3
Query:    3 GGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 332
            G E DF  EV  SEK +CHFY    +RCKI+D+HL  LA KH+ TKF+KL+ E APF   +L IK +P + + R G   D +VGF DLG  DDFTT+TLE  L    VI+
Sbjct:   77 GSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALLRDGKTQDYVVGFTDLGNTDDFTTETLEWRLGCSDVIN 186          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: TXND9_RAT (Thioredoxin domain-containing protein 9 OS=Rattus norvegicus GN=Txndc9 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 56/110 (50.91%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    3 GGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 332
            G E DF  EV  SEK +CHFY    +RCKI+D+HL  LA KH+ TKF+K + E APF   +L IK +P + + R G   D +VGF DLG  DDFTT+TLE  L    VI+
Sbjct:   77 GSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKPNVEKAPFLCERLRIKVIPTLALLRDGKTQDYIVGFTDLGNTDDFTTETLEWRLGCSDVIN 186          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: YERC_SCHPO (Thioredoxin domain-containing protein C2F3.12c OS=Schizosaccharomyces pombe GN=SPAC2F3.12c PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   39 SEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVI 329
            S+K + HFYH +F RCKI+D HL+ +A  H  TKFI+++A NAPF V KLG+K LP V+ +     +D+++GF DLG KDDF T  LE  L+K   I
Sbjct:  153 SKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSSAI 249          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: TXND9_HUMAN (Thioredoxin domain-containing protein 9 OS=Homo sapiens GN=TXNDC9 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    9 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 332
            E DF  EV  SE  +CHFY    +RCKI+D+HL  L+ KH+ TKF+KL+ E APF   +L IK +P + + + G   D +VGF DLG  DDFTT+TLE  L    +++
Sbjct:   79 ERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILN 186          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: TXND9_BOVIN (Thioredoxin domain-containing protein 9 OS=Bos taurus GN=TXNDC9 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 3
Query:    9 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLE 302
            E DF  E   S+K +CHFY    +RCKI+D+HL  L+ KH+ TKF+KL+ E APF   +L IK +P + + + G   D +VGF DLG  DDFTT+TLE
Sbjct:   79 ERDFFQEDKESKKVVCHFYRDSTFRCKILDRHLVILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDFTTETLE 176          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: TXND9_ARATH (Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 3
Query:    9 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVISXXXXXXXXXXXXYQENRHRTVRCSVDPDSDSD 428
            E DF + V  SE+ +CHFY +E + CK+MDKH+  LA +HI T+F+K+ AE +PF   +L I  LP + + +     D +VGF +LGGKDDF+T+ LE  + +  VI               + R R VR S   DSDS+
Sbjct:   74 EKDFFSVVKASERVVCHFY-RENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVR-RNVRQSARSDSDSE 211          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: TXND9_CAEEL (Thioredoxin domain-containing protein 9 homolog OS=Caenorhabditis elegans GN=tag-170 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    9 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 332
            E +F      S+K +C FY    +RCKI+DKH + LA KH+GT+FI ++AE   F  T+L I+ +P + I  K   +D + GF +LGGKD+FTT+T+E  L +  V++
Sbjct:   74 EKEFFEATKKSDKVVCLFYLPGNFRCKIVDKHFEILARKHVGTRFIHVNAEKVHFLTTRLNIRVIPSIAIVVKQQTVDYIRGFDELGGKDEFTTETMENRLARSEVLT 181          
BLAST of CX297668 vs. ExPASy Swiss-Prot
Match: PLP1_YEAST (Phosducin-like protein 1 OS=Saccharomyces cerevisiae GN=PLP1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 3
Query:    9 EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGG-KDDFTTKTLEVLLVKKGVI 329
            E D +   T +   + HF  + F +C+ M++ L+ LA +++ T+FIK++ +  PF V KL IK LP V+ ++ G+   R VGF  LG   + F  + LE  L   GVI
Sbjct:   90 EADAIQICTKTTMVVIHFELETFGKCQYMNEKLENLAKRYLTTRFIKVNVQTCPFLVNKLNIKVLPFVVGYKNGLEKVRYVGFSKLGNDPNGFDIRRLEQSLAHSGVI 197          
The following BLAST results are available for this feature:
BLAST of CX297668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PHLP3_DICDI4.735e-2852.34Phosducin-like protein 3 OS=Dictyostelium discoide... [more]
TXND9_MOUSE2.200e-2551.82Thioredoxin domain-containing protein 9 OS=Mus mus... [more]
TXND9_RAT1.092e-2450.91Thioredoxin domain-containing protein 9 OS=Rattus ... [more]
YERC_SCHPO1.207e-2350.52Thioredoxin domain-containing protein C2F3.12c OS=... [more]
TXND9_HUMAN1.576e-2347.22Thioredoxin domain-containing protein 9 OS=Homo sa... [more]
TXND9_BOVIN1.743e-2250.00Thioredoxin domain-containing protein 9 OS=Bos tau... [more]
TXND9_ARATH2.973e-2240.71Thioredoxin domain-containing protein 9 homolog OS... [more]
TXND9_CAEEL2.130e-2042.59Thioredoxin domain-containing protein 9 homolog OS... [more]
PLP1_YEAST3.643e-1236.11Phosducin-like protein 1 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionC06004A02SK RindPdig24 Citrus clementina cDNA clone C06004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297668 ID=CX297668; Name=CX297668; organism=Citrus clementina; type=EST; length=729bp
GAGGAGGTGAAGGGGATTTCTTGGCTGAAGTCACTGGAAGTGAGAAAGCG
ATTTGCCACTTCTACCATAAGGAGTTCTATCGCTGCAAGATAATGGATAA
ACATTTGAAGGCCCTTGCACCGAAGCATATTGGTACGAAGTTTATCAAGC
TGGATGCAGAGAATGCACCCTTCTTCGTGACCAAACTTGGAATTAAAACT
TTGCCTTGTGTCATAATATTCAGAAAAGGAATTGCTATAGATAGGCTGGT
TGGATTTCAAGATCTGGGAGGAAAAGATGATTTCACCACAAAGACACTTG
AGGTTCTACTAGTAAAGAAAGGTGTAATTAGCGAGAAGAAAGAGAATGAA
GATGATGAAGAGGATGAATATCAGGAGAATAGGCACAGGACGGTGAGATG
CTCTGTGGATCCAGACTCTGATTCTGACTGACGTGAAATCTGAAAATGAA
AATGTGGTTTCTTTCCTGGAATGTCAGTTGACTTAATAAATGTGAGCTTG
TATAACTATTTTCACATTTAAGGTTTTTCTATTGTCCCAAGAAAATCATT
TTTGTGATTAAAAAAGTAGTTATAAATTTATTATTCTAGCAATGTTGTTG
ACGGCAAGCGCTTCTGCCATTAGATCAAGGGATACAACCATTGGTTAGTT
CAGATCATTGATAGCTACATTGAAGCTTGTTTAATACTCGAAAAGAAAGC
AATTCTAGTTCTAAAAAAAAAAAAAAAAA
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